Rana temporaria (common frog): 120924343
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Entry
120924343 CDS
T07929
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120924343 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120924343 (POLR1A)
Enzymes [BR:
rtem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120924343 (POLR1A)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120924343 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120924343
NCBI-ProteinID:
XP_040191174
LinkDB
All DBs
Position
1:611745266..611923354
Genome browser
AA seq
1696 aa
AA seq
DB search
MLLSRNIPWRRLQGVSFVMFSAEEIRKLSVKAITNPQYMDNMGNPMLNGLYDLALGPADN
KEACGTCAQDFRSCPGHLGHIEMPLTVYNPLLFDKLYLLVRGSCFHCQLLTCPRSVIHLL
LCQLQVLERGALKDVYELEAVLSRFLEGNSAATGDEIQEELKTYTRKVLKAHSKEKVGSC
VKNICVTRNKLISDFWKNQMASKKCPNCKAPKSTVRKEHNSKLTIIMASKMQNGEDEITP
NSENLPQRGYLTPSTTQEHVEALWENEGFFLDCLFSGMEIGKEFSPDIFFLDLVVVPPAR
YRPVNRLGDQMYTNAQTVNLQAVLKDVTLIQKLLAVMAEERTKPPQETEICLEQSEPSQV
IDRSFLALLPGQTLTDKLYNSWIRLQSHVNIVFDSDMDRLMTDKFPGIRQILEKKEGLFR
KHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQFVTPWNVQELRQAVMNGPN
VHPGASIVVSEEGSRTILSATDAAQREAIAKQLLTPSTGVQRFTSKIVYRHVKNGDILLL
NRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQGELGRAEAYT
IACTDEQYLVPKDGTPLAGLIQDHMVSGASMTIRGCFFTREQYMELVYRGLTDKSGRVKT
LPPAILKPYKLWTGKQVVSTLLLNVIPDHHIPLNLTGKAKIGGKAWVKAPSRPIPGFNSD
SMCESQVIIRSGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSGRLLTCLARLFTAYLQ
LYRGFTMGVEDILVRPYANAKRRKIVKRSAHCGGKAVRAAFNLSEMASDEEAKGKWEDAH
LNKDQRDFNMVDLKFKEEVNQFSNEINKVCMPLGLHRHFPENNLQLMVQSGAKGSTVNTM
QISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFAPRSGGFVTGRFLTGIKPQEFFFHCMA
GREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVIQFLYGEDGLDVPKTQ
FLQPKQFPFIAENYEVIKQSKRLDEVLSRMDSEQAARHSNAIRKWKAKHPSAYQRLGAFL
LYSQKKMAAARALCEAEQYENGRELAAKQLMESWYSLDKKSRSKYMKRAAHLPDPCFSVF
QPDLYFGSVSESFQEKVDQYSHQVTTEESNAYYKSNVTADRLRTLLQLKWQRALCDPGEA
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMRVPVLT
TKRALKRVQALKKRLTRVCLAEVLHKLDVEETFRIEEKSQKHQVYKLKFHFLPYEYYRQE
KCLRPEDVIRFMEMRFFKIMLDSIKRRSAKLASYRDVSARKATRKDMDEGAEGTGTQEGQ
ELDNEEAVVDAEADEGDADATDAKRREKQEEEVDYESEDEATPEDEEQKDEENKLQEDEA
EDSQLLNGEETTSLPSERSRKKNNQTGLTKEVLTENRINDVLSLNTAIEEYSYDTDKSLW
CEVTLKLPLMKVHFDISSLVVTLAHSSVIHETKGITRCLLNEASNKKGEKEQILNTEGIN
LQELFKYSDILNLKRLYSNDVHAMANTYGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGTYRPLNRYGMQSSSSPFQQMTFETSYKFLKDATMAGAKDDLRSPSACLVVGK
VVKGGTGLFDLGQPAK
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgctgctctcccggaacataccatggcggcgcctacagggggtgagcttcgtgatgttc
agcgcggaggagatcagaaagttgagtgtgaaggccataaccaacccacagtacatggac
aatatgggcaaccccatgttgaacggcctgtacgatcttgctctgggccctgcggacaac
aaggaagcatgtggtacatgtgcgcaggatttccggagttgccctggacacctcgggcac
attgagatgccgttaacggtgtataatccgctactgtttgataaactgtacctcctggtg
cgaggctcctgctttcactgccaacttttgacatgtccccgttccgtcattcatcttctg
ctctgccagctgcaggtcctggaacgtggtgccctcaaggacgtttatgagctggaagca
gtccttagtcggttcttggaaggaaattctgctgccactggagacgagattcaggaagag
ctgaaaacttacaccagaaaagtccttaaagctcactcaaaggagaaagttgggtcgtgt
gtaaaaaatatctgtgtgacacgaaataaactgatttcagatttctggaaaaaccagatg
gcatctaaaaaatgccctaactgcaaggcaccaaaatctacagtacgaaaagaacacaac
agcaagctgactataataatggcatcaaaaatgcagaatggtgaggacgaaattactcca
aattcagaaaatttgccccaacgaggttacctgacccccagcaccacacaggaacacgtt
gaggccctatgggaaaatgaaggctttttcttggattgcctcttttctggaatggagatc
ggcaaggagttctctccggacatcttttttttggatcttgtggttgttccaccagctcgc
tatcggccggtaaaccgcctgggagatcagatgtacactaatgcccagacagttaacctg
caggcagtcctgaaggatgtgactctgatacagaagcttctggctgtcatggcggaagag
cggacaaagccaccgcaagaaaccgagatctgcctggagcagagtgagccttctcaagtc
atagatcgatccttcttggcattgctgcccgggcagacactcacagacaagctatacaat
tcctggattcgattacagagtcatgttaacattgtgtttgacagtgatatggacagactg
atgacggacaagttccctggaatcaggcagatcctggagaagaaggaaggtctgttccga
aaacacatgatggggaaacgtgtggactatgctgcacggtctgttatttgccccgatatg
tacatcggcaccaacgagattggaattccaatggtgtttgccacaaagctgacctacccc
cagtttgttacgccatggaacgtgcaggaactgagacaggctgttatgaatgggccaaac
gttcaccctggagcctccatagtggtcagtgaagaaggctcgcgtacaatattgagtgcc
actgatgcagcacagagggaggccattgcaaagcagcttcttactccatccaccggtgtg
cagagattcacctccaagattgtgtatcgccatgtaaagaacggggacatcctgctgctt
aaccggcagcccaccttgcacaggccatccatacaagcccacaaggcccgaatacttcca
ggggagaaggtcctgaggctgcactatgccaactgcaaggcttacaatgctgactttgat
ggcgatgaaatgaacgctcacttcccccagggtgaactaggccgggcagaagcctacacc
atagcatgtactgatgagcagtatttggtgcctaaggatgggacgccattggcaggactg
atccaggatcacatggtgtctggggcaagtatgaccatccgaggttgtttcttcaccaga
gaacagtacatggagctggtctacagggggctgacagataaaagcggccgggtaaaaacc
ctcccaccagcaatcctaaaaccatacaaactttggacaggaaagcaggtagtttctacg
ttactcctcaatgtaattccagatcatcacatcccactaaacctgacaggaaaggcaaag
attggtggcaaggcgtgggtgaaggccccatctaggccaataccgggttttaattcagac
tccatgtgtgagtctcaggttatcattcgtagtggagaactgctgtgcggagtcttggac
aaagcccactatggcagctcttcctttggactcgttcactgttgctatgagctgtatggt
ggagagaccagtggaagattgctaacctgcctggctcgtctctttactgcttacttacag
ctttaccggggctttaccatgggagtggaggacattttagttcgaccctacgctaatgcc
aaaagacggaagattgtgaaacgttctgcacattgtggtgggaaggctgtgagagcggct
tttaacctctcagagatggcttcagatgaagaggccaaaggaaagtgggaggatgcccat
ctaaacaaagaccaaagggactttaacatggtggatttgaaattcaaggaagaagttaat
cagtttagcaatgaaatcaataaggtgtgcatgccccttggtctccacaggcacttccca
gaaaataatttacagctgatggttcagtctggagccaaaggatcaacagtgaataccatg
cagatttcctgtctcctgggtcagattgagttggaaggccggcgaccgccattgatgccg
tcggggaagtctttgccttgtttccagccctacgactttgcgccacgatctggcggcttt
gtgacaggtcgctttctcactggcatcaaacctcaggaattcttctttcattgtatggct
gggagggaaggtctggtggacaccgctgtgaaaacaagtcgttctggatacctgcagagg
tgtgttattaaacatctggaaggactagtggtccagtatgatctgacagtccgtgacagt
gatggcagcgtgattcagtttctctatggagaagatggactggatgtccccaagacacag
tttctacagccaaagcaattcccgttcattgctgagaattatgaggttattaaacagtcc
aagcgtttggatgaggtcttgtcaaggatggactctgagcaggcagcccgacacagcaat
gccatcaggaaatggaaagccaagcatccttccgcatatcagaggttgggagctttcttg
ttgtactcccagaagaagatggctgctgccagggccctgtgtgaggctgagcagtacgag
aatggcagggagctggctgccaagcagctgatggagagttggtactccttggataaaaag
tctcggagcaaatacatgaagcgagcggcccatctgcccgacccttgcttttcagtcttt
cagcccgatttgtattttggatctgtgtctgaatcatttcaagagaaggtggatcagtac
agccaccaagtcaccacggaggaaagcaacgcttactacaagtccaatgttacagctgat
agattgaggacgttgctgcagctgaagtggcagagagcgctgtgtgatcccggggaggcc
gtggggcttctggcagctcagagtatcggggagccatctacacaaatgacactaaacact
ttccactttgctggcagaggagaaatgaatgtcacgttgggtattcccaggcttagagaa
attctgttaattgccagctccaatattaaaactcctatgatgcgcgttcctgtcctaacc
accaagagagccttaaagagggtgcaagccctgaagaaaaggctcactcgagtgtgtctc
gcagaggtgttgcataaattggatgtggaggaaaccttccggatagaggaaaagtcccaa
aaacatcaagtgtataaactcaagtttcacttcctgccatacgaatattaccgtcaggaa
aaatgcttgagacctgaagacgttattcgattcatggagatgaggtttttcaaaattatg
cttgattccatcaagaggagaagtgcaaagcttgcctcctacagggatgtctctgcccga
aaagcaacacggaaagatatggatgaaggagcagagggtactggaacccaggagggtcag
gagttggacaatgaagaagccgttgtggatgcagaggccgatgaaggagatgcagacgct
actgacgcaaagagaagagagaaacaagaagaggaggtggattatgagagtgaagatgag
gcaaccccagaggatgaagagcagaaggatgaggagaacaagcttcaggaggacgaagct
gaagactctcagctgcttaatggggaggaaaccacttcattaccctcggaaagatccaga
aagaaaaataatcaaacgggtctcaccaaagaagtgctgacagagaatcggatcaatgat
gtcctgagcctcaacactgccattgaagagtactcatatgatactgacaagagcttgtgg
tgtgaggtcacattgaaactgccattaatgaaggttcactttgacatttcatctcttgtt
gtgactttggcacacagtagtgttattcatgaaacaaagggaataactcgatgcctcctt
aacgaagcctccaacaagaaaggggagaaagagcagattctcaacacagagggcataaac
ctgcaagagctcttcaaatattctgatatactaaacttgaaaaggttgtattcaaatgac
gttcatgcgatggcaaatacatacggcatagaggctgccttgagggtagtcgaaaaagaa
ataaaagatgtgtttgctgtttatggtattgaggtggatcctcgtcacctgtcccttgtg
gcagattacatgtgctttgaaggaacatatcgtcccttaaatcgctatggcatgcagtca
agctcttctcctttccagcagatgacatttgagaccagctacaaattcctgaaggatgct
accatggcgggtgctaaggatgatctgcgctccccatccgcatgtctcgtagtaggaaaa
gtggtgaaaggcggaactggattgtttgacctagggcagccagcgaagtga
DBGET
integrated database retrieval system
