Raoultella terrigena: NCTC13098_06062
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Entry
NCTC13098_06062 CDS
T06046
Symbol
ldcC
Name
(GenBank) Lysine decarboxylase, constitutive
KO
K01582
lysine decarboxylase [EC:
4.1.1.18
]
Organism
rtg
Raoultella terrigena
Pathway
rtg00310
Lysine degradation
rtg01100
Metabolic pathways
rtg01110
Biosynthesis of secondary metabolites
rtg01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
NCTC13098_06062 (ldcC)
Enzymes [BR:
rtg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.18 lysine decarboxylase
NCTC13098_06062 (ldcC)
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
PKcGMP_CC
Motif
Other DBs
NCBI-ProteinID:
VDR29644
UniProt:
A0A3P8J5X6
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All DBs
Position
1:complement(5059743..5061917)
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AA seq
724 aa
AA seq
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MMPALGQFQEECVNIIAIMGPHGVYHKDEPIKELEAALQQQGFQTIWPQNSADLLQFIEH
NPRICGVIFDWDEYNVELCSDINQLNEYLPLYAFINAHSTMDVSSQDLRMTLWFFEYALG
LAQEIATRIGQYTREYLDNITPPFTKALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFY
DFFGGNTLKADVSISVTELGSLLDHSGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVG
MYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTRDSIQHK
VSTTGGAQWPVHAVITNSTYDGLLYNTTWIKETLDVPSIHFDSAWVPYTHFHPIYQGKSG
MSGDRVPGKVIFETQSTHKMLAALSQASLIHIKGSYDEETFNEAFMMHTSTSPSYPIVAS
IETAAAMLRGNSGRRLIQRSIERALDFRKEVQRLREEADGWFFDIWQPEDIAETRCWPVA
AGEQWHGFQDADDDHMFLDPVKVTILTPGMDEQGNMDDEGIPAALVAKFLDERGVVVEKT
GPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQD
LAQGIHRLIRQHQLSQLMLSAFDVLPEMKMTPHQAWQRQIKGEVETIELENLVGRISANM
ILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDEDGVYRVRV
LKND
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgccttaggtcaattccaggaggaatgcgtgaatatcattgccatcatgggt
ccccacggcgtctatcataaagacgaaccgattaaagaactggaagccgccctgcaacag
caaggctttcagaccatctggccgcagaatagcgccgacctgctgcagtttatcgaacac
aatccgcggatctgcggcgtcatttttgactgggatgagtataacgtcgagctgtgcagc
gatattaatcagctcaacgaatatctgccgctgtacgcgtttatcaacgcgcattcgacg
atggacgtaagcagccaggatctgcgtatgacgctgtggttcttcgagtatgctctcggc
cttgcacaggagattgccacccgcatcggccagtacacccgcgagtatctcgacaacatc
acgccgccgtttaccaaagcgctgttcaactacgtccaggagggtaaatataccttctgc
acgccgggacatatgggcggcagcgcctaccagaaaagcccggtaggctgcctgttttat
gatttctttggcggcaatacgctcaaggccgacgtctccatttccgtgacggagttggga
tcgctgctcgatcactccgggccgcacctggaggcggaagagtatatcgcccgcgccttc
ggtgcggagcagagctatatggtgactaacggcacctcaacgtcgaacaaaattgtcggc
atgtactctgccccggcggggagcacgctgcttatcgatcgcaactgccacaagtcgctg
gcgcatctgctgatgatgagcgacgtcgtcccgctgtggctgaagccgacgcgcaatgcg
ctggggatcctcggcggcatcccgaagcgggagtttacccgcgacagcattcagcacaag
gtgagcacgacgggcggggcgcagtggccggtacatgcggtgatcaccaactccacctac
gacggcctgctgtataacaccacctggataaaagagacgctcgacgtcccctctatccac
tttgactctgcgtgggtgccctatacccatttccacccgatttatcaggggaagagcggc
atgagcggcgatcgcgttccgggcaaggttatctttgaaacccagtcgacgcacaaaatg
ctggcggcgctgtcgcaggcttcgctgatccatattaaaggcagctatgacgaagagacc
ttcaatgaagcctttatgatgcatacctctacctcgccgagctatcccatcgtcgcctcg
attgaaaccgccgcggcaatgctgcgcgggaactcgggcaggcgcctgattcagcgctcg
atagagcgggcgctggatttccgtaaagaggtacagcgcctgcgcgaagaggcggacggc
tggttctttgatatctggcagccggaagatattgccgagacccggtgctggccggttgct
gccggcgagcagtggcacggttttcaggatgccgatgacgaccatatgttcctcgatccg
gttaaggtgacgatcctgacgccggggatggatgagcagggcaatatggatgacgaaggc
atcccggccgcgctggtggcgaagttcctcgatgagcgcggcgtggtggtggaaaaaacc
gggccctataacctgctgttccttttcagcatcggcatcgacaaaacccgggcgatgggc
ctgctgcgcggcctgacggagtttaagcgcgcctacgatctcaatctgcgggtgaagaat
atgctgccggatctctacgccgaagatccggatttctaccgcaatatgcgcattcaggat
ctggcccaggggatccatcgactgatccgtcagcaccagctttcgcagctgatgctgagc
gccttcgacgtcctgccggaaatgaagatgacgccgcaccaggcctggcagcggcaaatc
aaaggcgaggtggagaccattgagctggaaaatctggtcgggcgcatatccgctaacatg
atcctgccgtatccgccgggcgtgccgctgctgatgcccggggagatgattaccgaggag
agccgcgcggtgctcgatttcctgctgatgctgtgctccattgggcgccattatccgggc
tttgaaaccgacattcacggagcgaagcgcgacgaggatggcgtctatcgggtacgggtc
ttaaaaaacgattag
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