Raoultella terrigena: NCTC13098_06973
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Entry
NCTC13098_06973 CDS
T06046
Symbol
fadB
Name
(GenBank) Fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
rtg
Raoultella terrigena
Pathway
rtg00071
Fatty acid degradation
rtg00280
Valine, leucine and isoleucine degradation
rtg00310
Lysine degradation
rtg00362
Benzoate degradation
rtg00380
Tryptophan metabolism
rtg00410
beta-Alanine metabolism
rtg00640
Propanoate metabolism
rtg00650
Butanoate metabolism
rtg00907
Pinene, camphor and geraniol degradation
rtg00930
Caprolactam degradation
rtg01100
Metabolic pathways
rtg01110
Biosynthesis of secondary metabolites
rtg01120
Microbial metabolism in diverse environments
rtg01200
Carbon metabolism
rtg01212
Fatty acid metabolism
Module
rtg_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
NCTC13098_06973 (fadB)
00650 Butanoate metabolism
NCTC13098_06973 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
NCTC13098_06973 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
NCTC13098_06973 (fadB)
00310 Lysine degradation
NCTC13098_06973 (fadB)
00380 Tryptophan metabolism
NCTC13098_06973 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
NCTC13098_06973 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
NCTC13098_06973 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
NCTC13098_06973 (fadB)
00930 Caprolactam degradation
NCTC13098_06973 (fadB)
Enzymes [BR:
rtg01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
NCTC13098_06973 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
NCTC13098_06973 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
NCTC13098_06973 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
NCTC13098_06973 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
CetZ_C
Motif
Other DBs
NCBI-ProteinID:
VDR30514
UniProt:
A0A3P8J8N5
LinkDB
All DBs
Position
1:5841767..5843956
Genome browser
AA seq
729 aa
AA seq
DB search
MLYKGDNLYLDWLEDGIAELVFDAPGSVNKLDTATVASVGHALDVLEKQTDLKGLLLRSE
KAAFIVGADITEFLSLFLVPQEQLSQWLHFANSVFNRLEDLPVPTVSAVNGYALGGGCEC
VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRLLGADSALEIIAAGKDVGADQALK
IGLVDGIVKPEKLRDGALSILRQAISGDLDWQAKRQPKLEPLKLSKIEAAMSFTIAKGMV
AQTAGKHYPAPMTAVKTIEAAARLGRDEALKLENQSFVPLAHTKEARALVGIFLNDQYVK
GKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVIMKDINDKSLTLGMNEAAKLL
NKQLERGKIDGLKLAGVIGTIQPTLDYSGFERVDVVVEAVVENPKVKKAVLAETEGKVRP
DTVLASNTSTIPIGELADALQRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIAKVVAW
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKVDKVMEKLFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYTQDSKGKP
KKEEDAAVDGLLADVSQPKRDFSDEEIIARMMIPMVNEVVRCLEEGIIASPAEADMALVY
GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRSKARHNEPYYPPVEPA
RPVGELKTA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctacaaaggcgacaacctgtacctcgactggctggaagatggcattgccgaactg
gtgttcgatgcccccggctcggtgaacaagctcgataccgcaaccgtagccagcgtcggc
catgcgctggacgtgctcgaaaagcaaacagatcttaaagggctgctgctgcgctctgaa
aaagcggcctttatcgtcggtgccgacataaccgaatttctctccctgttcctggtcccg
caggagcagctgagccaatggctgcattttgccaatagcgttttcaaccgcctcgaagat
ttaccggtgcccaccgtttcagcggtcaacggctatgcgctgggcggcggctgcgagtgc
gtgctggcaacggactatcgtctggccacgccggacctgcgcatcggcctgccggaaact
aagctgggcatcatgccgggcttcggcggttcagtgcgtatgccgcgtctgctcggcgcc
gatagcgcgctggaaattatcgccgccggcaaagacgtcggtgcggatcaggcgctgaaa
atcggcctcgtcgacggcatcgtcaagccggagaaactgcgcgacggcgcgctcagcatt
ttacgccaggccattagcggcgatctcgactggcaggcgaagcgccagccgaagctggag
ccgctgaagctcagcaaaatcgaagcggctatgagcttcaccattgcgaaaggcatggtt
gcccagaccgccgggaaacactatccggcgccgatgaccgccgtcaaaaccatcgaagct
gccgcccggctcggccgcgatgaggcgctgaagctggaaaatcaaagcttcgtcccgctg
gcgcataccaaagaggcccgcgcgctggtcggcatcttcctcaacgatcagtacgtcaaa
ggcaaagcgaagaagctcaccaaagacgttgaaaccccgaaacaggccgccgtgctgggc
gcggggattatgggcggcggtatcgcctatcagtctgcctggaaaggcgtgccggtcatc
atgaaggatattaacgacaaatcgctgacgctcggcatgaatgaagccgccaagctgctt
aacaaacagcttgagcgcggcaagattgacggcctgaagctggctggcgtcatcggcacc
attcagccaacgctggactactccggctttgagcgcgtggacgtggtcgttgaagccgtt
gtcgaaaacccgaaagtgaaaaaagcggtgctggctgagaccgaaggcaaagtgcgcccg
gatacggtgctggcctccaacacctcaacgatcccgatcggtgaactggcggacgctctg
cagcgtccggagaatttctgcggcatgcacttctttaacccggtgcaccgtatgccgctg
gttgaagtgattcgcggcgaaaaaacctcggacgagacgattgccaaagtggtggcctgg
gccagcaagatgggcaaaacgccgatcgtggttaacgactgccccggcttcttcgtcaac
cgcgtgctgttcccctacttcgccggcttcagccagctgctgcgcgatggcgcggacttc
cgcaaggtcgataaggtcatggagaagctgttcggctggccgatgggcccggcgtacctg
ctcgacgtggtcggcatcgataccgcccaccacgcgcaggcggtgatggccgccggcttc
ccgcagcgcatgcagaaagattatcgcgatgcgattgacgccctgttcgacgctaaccgc
ttcggccagaaaaacggcctgggcttctggcgctatacccaggacagcaaaggcaaaccg
aagaaagaagaggacgcggccgttgacggcctgctggcggacgtaagccagccgaagcgc
gacttcagcgatgaagaaattatcgcccgcatgatgattcccatggtcaacgaagtggtg
cgttgcctggaagaaggcattatcgccagcccggcggaagcggatatggcgctggtttat
ggcctcggcttccctccattccacggcggcgccttccgctggctggatacgctgggcagc
gcaaaatatctcgatatggcacagcagtatcagcacctcggcccgctgtatgaggtgccg
gaaggtctgcgcagcaaagcacgccataacgaaccctattaccccccggttgaacctgcc
cgcccggtaggcgagctgaaaacggcttaa
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