Rhodanobacter thiooxydans: LRK53_08260
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Entry
LRK53_08260 CDS
T08065
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rth
Rhodanobacter thiooxydans
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rth03009
]
LRK53_08260 (rimO)
Enzymes [BR:
rth01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LRK53_08260 (rimO)
Ribosome biogenesis [BR:
rth03009
]
Prokaryotic type
ribosomal protein modification factors
LRK53_08260 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
Motif
Other DBs
NCBI-ProteinID:
UJJ56350
LinkDB
All DBs
Position
1857247..1858584
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AA seq
445 aa
AA seq
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MSQTAHKIGFVSLGCPKALVDSERILTQLKVEGYQIVPSYGEADAVVVNTCGFIDAAVQE
SLDSIGTALNENGKVIVTGCLGKREALIREAYPDVLSISGPQDYASVMSAVHQALPPQRN
KFIDIVPDTGVKLTPKHYAYLKISEGCNHRCSFCIIPSMRGNLVSRPVDEVLVEAEKLVK
GGVKELLVISQDTSAYGVDLKYAERPWRGKAYRTRMTELCEGLAELGAWTRLHYVYPYPH
VDELMPLMAEGKLLPYLDIPFQHASPRILKLMKRPGNIDKTLERIRNWRAQVPDLTIRST
FIVGFPGETDAEFEELLDFLREAELDRVGAFAYSPVDGAKANELPGAVSEELKEDRLEQF
MAVQAEISAAKLQRKIGRTLKVLVDEANADGAVARSAADAPEIDGSVLIADGQHLKPGQF
VDVVVEAASDHDLTARLARPTLKVI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagaccgcccacaagatcggcttcgtcagtctcggctgccccaaggcgctggtc
gactccgagcgcatcctcacccagctcaaggtcgagggctaccagatcgtgcccagctac
ggcgaggccgacgcggtggtggtgaacacttgcggcttcatcgacgccgcggtgcaggag
tcattggactcgatcggcaccgcgctcaatgagaacggcaaggtgatcgtcaccggctgc
ctgggcaagcgcgaggcgttgatccgcgaggcctatcccgacgtgctgtcgatcagcggc
ccgcaggactacgccagcgtgatgagcgcggtgcaccaggcgttgccgccgcagcgcaac
aagttcatcgacatcgtgccggacactggcgtgaagctcaccccgaagcactacgcctac
ttgaagatttccgaaggctgcaatcaccgctgcagcttctgcatcatcccgtcgatgcgc
ggcaacctggtctcgcgcccggtggacgaagtgctggtggaggccgagaagctggtcaag
ggcggtgtgaaggaactgctggtgatctcgcaggacaccagcgcctacggcgtggacctg
aagtacgccgagcgcccgtggcgcggcaaggcgtaccgcacgcgcatgaccgagctgtgc
gaaggcctggccgagctgggcgcgtggacgcgcctgcactacgtctatccgtacccgcac
gtggacgagctgatgccgctgatggcggaagggaaactgctgccgtacctcgacatcccg
ttccagcacgccagcccgcgcatcctgaaactgatgaagcgccccggcaacatcgacaag
acgctggagcgcatccgcaactggcgcgcccaggtccctgacctcaccatccgcagcacc
ttcatcgtgggcttccccggcgagaccgacgccgagttcgaggagctgctggattttctg
cgtgaggccgagctggaccgcgtgggcgcgttcgcctattcgccggtggacggcgccaag
gccaacgagctgcccggtgcggtctccgaggagctgaaggaagaccgcctggaacaattc
atggccgtacaggcggaaatctccgccgccaagctgcagcgcaagattggccgcacgctc
aaggtgctggtggacgaggcgaacgccgacggcgccgtggcccgctccgccgccgatgca
cccgagatcgacggcagcgtgctgatcgccgacggccagcacctcaagcccggccagttc
gtcgacgtggtggtcgaggcggccagtgaccacgacctcaccgcgcgcctggcgcgtccg
acgctcaaggtgatctga
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