Rhincodon typus (whale shark): 109913092
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Entry
109913092 CDS
T06055
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03020
RNA polymerase
rtp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109913092 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
109913092 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109913092 (polr2b)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109913092 (polr2b)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109913092 (polr2b)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109913092 (polr2b)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109913092 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
109913092
NCBI-ProteinID:
XP_020368155
LinkDB
All DBs
Position
1:162385206..162557038
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDPDDGEDTQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDAPPIDLQAEAQHTTGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVIKEGEEQMQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVS
MLARGGQGVRKSAIGQRIVATLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEILQKEVLPHVGVSDFCE
TKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIY
SQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPDQLMTTLRKLRRQMDIIV
SEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVA
SGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIMNRSAVDRGYFRSVFYRSYKEQESKKGFDQEEVFERPTRETCQ
GMRHAIYEKLDEDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGR
SRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLLAIANTRTHTYECR
GCRNKTQISLVRMPYACKLLFQELMSMSIAPRMLIS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatccggacgacggtgaggatacgcaatatgatgaagatgatgatgaaatcacc
ccagatttgtggcaggaggcttgttggattgttatcagctcgtactttgatgaaaaaggt
ttggttcgacagcagttggattcatttgatgaattcatacaaatgtcagtgcagagaatt
gtggaagatgctcctccaatagatctccaagctgaagcacaacatactactggggaagta
gaagagccgcccaggttcttactaaaatttgaacaaatttatttatccaaaccaacacat
tgggaaagggatggggcaccatctccaatgatgccaaatgaagctagattacgaaatctt
acgtattcagcccctctctatgtggacatcacaaagacagtgattaaggagggagaggag
cagatgcaaacccagcatcagaaaacatttataggaaaaattcctatcatgcttcgttcc
acatattgtcttcttagtggtctgacagatcgtgatctctgtgagctcaatgaatgccca
ctggatcctggtggatatttcatcatcaatggatcagaaaaggtcctaattgcacaggaa
aaaatggcgacaaatacagtgtatgtctttgcaaagaaagactccaaatatgcatacaca
ggagagtgccggtcttgtttagagaattcttctcgtcccacaagtaccatctgggtcagc
atgctagcaagaggagggcagggtgtaagaaaaagtgcaataggccagagaatcgttgct
acactaccatacatcaggcaggaagttccaataattattgtgtttcgtgctttgggattt
gtgtctgatcgagacattttggagcacattatctatgattttgatgaccctgaaatgatg
gaaatggtgaagccttccctggatgaagcattcgttatccaggaacaaaatgttgcattg
aattttattggttcaagaggtgcaaagcctggtgtaacaaaagagaagagaattaaatat
gcaaaagaaatcctacagaaagaagtgctgccacacgttggagtcagtgacttttgtgag
actaagaaagcttatttcttgggttatatggttcatcgattactattggctgctttaggc
cgaagagaattggatgacagagatcattatgggaacaaaaggctggacctggctggacca
ttgcttgctttcctgtttagaggtatgtttaagaacctattgaaagaagtacggatatat
tcccagaagttcatagacagagggaaagatttcaacttggagttggcaattaaaacgcgg
attatttctgatggtctaaaatactcactagcaacaggaaattggggagatcaaaagaag
gctcatcaagccagagctggtgtatcccaggtattgaatcggttgacttttgcatcaaca
ctctcgcaccttcgtcgcctaaactctccgatcggaagagatggaaagctggcaaagccc
aggcagctacacaataccttatggggtatgatttgccctgctgagacaccagagggccat
gctgtgggattagtgaaaaatctagctttgatggcttacatttctgtaggatctcagccc
tcgcccattttggaattcttggaagagtggagcatggaaaatctcgaagaaatttctcca
gctgctattgcagatgctacaaaaatttttgtcaatggttgttgggttggaatacataaa
gatcctgaccagctaatgaccacactaaggaagctgaggcgacagatggatatcattgta
tctgaggtgtccatggtgagagacattcgcgagcgtgaaattcggatttacacggatgca
ggtagaatttgtcgacctcttttgattgtagagaaacagaagctgcttctaaagaagagg
catatcgatcaattgaaagagcgagagtacaacaattatagttggcaggatcttgtggct
agtggtgtggtggagtacattgacacactggaagaggagactgtaatgttagccatgact
cctgatgatttgcaggaaaagggtgttgcatactgttcaacatatacacattgtgagatt
catccatcaatgattctgggtgtttgtgcatcaattattccatttcctgatcataaccag
tctcccagaaatacatatcagtctgctatgggtaaacaagctatgggagtttatattaca
aactttcatgtgcgaatggacaccctagcacatgtgctgtattatcctcaaaagccactt
gtcacaacccgttccatggagtacctgcgattcagagagctaccagctggtattaactct
atagtagcaattgcttcatataccggttacaatcaagaagattctgtcatcatgaatcgt
tctgctgtagacaggggctatttcaggtctgtattctaccgctcatacaaagaacaagaa
tcaaagaaaggttttgaccaggaggaagtatttgaaaggcctactcgagaaacttgccag
ggtatgagacatgctatttatgagaagttagatgaagatggactaatagcacctggtgtg
cgtgtgtcaggagatgatgtaatcattggtaaaacggtaacgttgccagaaaatgaagat
gagcttgaaagcacaaatcgacgatacacaaagagagactgcagcaccttcctgcgaact
agtgagactggtattgtggatcaggtcatggtgacactaaaccaagaaggatacaaattt
tgcaaaattagagtacgatctgtcagaattccacaaattggagacaaatttgctagtcgt
catggtcagaagggaacgtgtggtatccagtacagacaagaggatatgccattcacgtgc
gaaggtatcactccagacattataatcaatccacatgccattccttctcgaatgactgtt
ggtcacttgattgagtgcctgcaagggaaggtgtcggcaaataagggtgaaattggtgat
gctacaccttttaatgatgcagttaatgtacagaagatttcaaacttgttatcagactat
ggataccatcttcgaggaaatgaggttctatataatgggtttacaggacgtaaacttaca
tcacaaatctttattgggcctacttattaccagcgcctgaaacatatggtggatgacaaa
attcattctcgtgctcgaggacctgtccagatcctgaacagacagcctatggagggtaga
tctcgtgatggcggtctacgttttggggagatggagcgagactgtcagattgcccatggt
gctgctcagtttttgagagagaggctttttgaggtttctgatccttatcaggtgcacgtg
tgcaatctttgtggactactggcaattgccaataccaggacacatacttacgaatgccga
ggatgtcgtaacaaaactcagatttcgttggtacggatgccctatgcctgcaaacttctt
ttccaggaattgatgtcaatgagtattgcaccacgaatgttgatttcataa
DBGET
integrated database retrieval system
