Rhododendron vialii: 131311453
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Entry
131311453 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131311453 isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rvl03016
]
131311453
Enzymes [BR:
rvl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
131311453
Transfer RNA biogenesis [BR:
rvl03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
131311453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
131311453
NCBI-ProteinID:
XP_058194905
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Position
12a:complement(936894..944201)
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AA seq
622 aa
AA seq
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MEDIEDLLVGSGGAPPGFRLPVPASVGVNTKKKNNKQRPNLRKNHAIQSSLSGLLSPKIP
GTEIIYMKTFGCSHNQSDSEYMAGQLSAFGYGLSDNPEEADLWLINTCTVKSPSQSAMDT
LISKCRSAKKPLVVAGCVPQGSRDLKELEGVSVVGVQQIDRVVEVVEETLKGHEVRLLNR
KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVARVRAVVTD
GVKEIWLSSEDTGAYGRDIGANLPMLLKAIVAELPSDGSTMLRVGMTNPPYILEHLKEIA
DVLCHPCVYSFLHVPVQSGSDRVLSAMKREYTVSEFRKVVDTLNELVPGMQIATDIICGF
PGEADEDFAETVSLIDDYKFSQVHISQFYPRPGTPAARMKKVPSTLVKKRSRELTSVFES
FRPYNGMEGKVERIWITEIATDGKHLVGHTKGYVQVLVVGPETMLGTSAIVKITSVGRWS
VFGEVIEILTQTKGNPGSRERESTGNKCKPCPDPDETCACAKEPQPCACEMPSNGDEAIV
SLPKNEIMWTEERTNRNVIRWLLRKRRNQKRMENGIISEPKENHELDSGRTRDWALFDWA
LLGGAILSLLTVIVLLLWACWR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatagaggatctgctggtggggagcggcggagctccgccggggttccggttg
ccggtaccggcgtccgtcggcgtcaatacgaagaagaaaaacaacaagcagcggcctaac
ctccgcaagaaccatgcaatccaaagctcactctctggccttctctctccaaaaatcccc
ggcactgagatcatatatatgaagacgtttgggtgctcgcataaccaaagtgacagtgaa
tatatggcgggtcagctttcagcatttggttatggattgagtgacaatcctgaggaggca
gacctgtggctgataaatacatgcacggtgaagtccccgagtcagtctgctatggatact
ctaatatcgaaatgcagaagtgcaaaaaaacccttggtggtggcgggatgtgtgcctcaa
ggaagtcgtgatttgaaagagcttgaaggggtcagcgtagttggtgtccagcaaattgac
cgtgtggttgaagttgtggaagaaactctgaaaggtcatgaggtgcggcttttgaaccgg
aagacattaccagcccttgatctaccaaaggttagaaagaacaaatttgttgagattctt
cctataaatgttggttgtttaggtgcttgcacttattgcaagaccaagcatgcccgtggt
catttaggaagctataccgttgacagccttgtagcccgtgtcagagctgtcgtaactgat
ggagtgaaggagatttggttgagtagtgaagacactggagcatacggccgtgacattggt
gctaatcttccaatgttgttgaaggctattgttgcagagcttccctctgatggaagcacc
atgcttcgtgttgggatgactaatcctccatacattcttgagcacttaaaagagattgca
gatgttctttgtcatccttgcgtttactcatttcttcatgtacctgtccaatctgggagt
gacagagttttaagtgcaatgaaacgggagtatactgtaagtgagttcaggaaggtagta
gatacattgaatgaacttgtccctgggatgcaaattgctactgatataatctgcggattt
cctggtgaagctgatgaagatttcgctgagactgtgagcctgattgacgattacaagttt
tctcaagttcatatatcacagttctatccccgtcccggaacccctgctgcgaggatgaag
aaggtcccaagcactctagtgaagaaacggagtcgggaattaacttctgttttcgaatcg
ttcagaccttacaatggcatggaaggcaaagtagagagaatatggatcactgaaattgcc
actgatggaaaacacttggtgggccacaccaaagggtatgtgcaggtactggtagttggt
ccggaaaccatgttggggacttcagctatcgtgaagataacatcagtcggaagatggtca
gtgtttggggaagtgatcgaaattctcacacaaacaaaaggtaaccctggatcaagagag
agagagtccactggcaacaaatgtaaaccttgccctgatcctgatgaaacttgtgcatgt
gcaaaagagccccaaccttgtgcttgtgaaatgccaagtaatggggatgaagctattgtt
tcccttccgaagaatgaaattatgtggacagaagagcgaacgaaccgaaacgttattaga
tggttgctaaggaagcggagaaaccaaaagaggatggaaaatggtattatctcggaacct
aaggaaaatcacgaattggatagtggaaggacgcgagactgggctctgttcgactgggct
cttctgggcggagctattctgagcctgttgacagttatagttctactattatgggcgtgc
tggcggtag
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