KEGG   Rhododendron vialii: 131318632
Entry
131318632         CDS       T09330                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
rvl  Rhododendron vialii
Pathway
rvl03020  RNA polymerase
rvl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131318632
  09124 Replication and repair
   03420 Nucleotide excision repair
    131318632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rvl03021]
    131318632
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131318632
Transcription machinery [BR:rvl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     131318632
  RNA polymerase III system
   RNA polymerase III
     131318632
  RNA polymerase I system
   RNA polymerase I
     131318632
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131318632
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Otopetrin DUF3221 AAA_19
Other DBs
NCBI-GeneID: 131318632
NCBI-ProteinID: XP_058204526
LinkDB
Position
3a:complement(4199669..4204965)
AA seq 243 aa
MDPMEDDTEQQQPQQQQQQRQQDMDLNGEPYSRCLSSYVDEGSTESHRYYLSRRTLLEML
RDRGYSVPAAEIEMSLQDFRSIHGQTPDIERLRISASRRSDSLDKILVIFCGPGIVKVNV
IRIIGTMIGNKDSLSRLILVVQNRVTNQAMKAMDLFSFKVEVFQITELLVNITKHALKPK
HRVLTDEEKKKLLKKFSLEEKQLPRMLQKDAISRYYGLEKGQVVKVTYSGDITESHVTYR
CVW
NT seq 732 nt   +upstreamnt  +downstreamnt
atggatcccatggaggacgacacggagcaacagcagccgcagcagcagcagcagcagagg
cagcaagacatggatttgaacggggagccctacagccggtgcctgagcagctacgtcgac
gaaggcagcaccgagagccaccgatactacctctcccgcagaaccctccttgagatgctc
agggaccggggctactccgtcccagccgccgaaatcgaaatgtccctccaggatttccgg
tccattcacggccaaacccccgacatcgagcgcctcaggatctccgcctctcgccggtcc
gactccttggataagatcctcgtgattttctgtggaccaggtatcgtaaaagtgaatgtc
attcgcatcattggaactatgataggtaacaaagactctttgagtcggctgatattagta
gtgcaaaatcgagtaacaaaccaagctatgaaggctatggatctttttagcttcaaggtg
gaagttttccaaattaccgagttgcttgttaacatcacaaagcatgcgttaaagccaaag
caccgtgtattgactgatgaagagaaaaagaagctcttgaagaagtttagtttggaggaa
aaacagcttcctcggatgttgcagaaagatgctatttcacgatattatggactggagaag
gggcaagtggttaaagtcacttacagtggcgacatcacggagtcccacgtcacttatcgc
tgcgtttggtga

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