KEGG   Rhagoletis zephyria (snowberry fruit fly): 108383079
Entry
108383079         CDS       T08513                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03030  DNA replication
rze03410  Base excision repair
rze03420  Nucleotide excision repair
rze03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108383079
   03410 Base excision repair
    108383079
   03420 Nucleotide excision repair
    108383079
   03430 Mismatch repair
    108383079
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rze03032]
    108383079
   03400 DNA repair and recombination proteins [BR:rze03400]
    108383079
Enzymes [BR:rze01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108383079
    6.5.1.6  DNA ligase (ATP or NAD+)
     108383079
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108383079
DNA replication proteins [BR:rze03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    108383079
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     108383079
DNA repair and recombination proteins [BR:rze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108383079
   NER (nucleotide excision repair)
    Other NER factors
     108383079
   MMR (mismatch excision repair)
    Other MMR factors
     108383079
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 108383079
NCBI-ProteinID: XP_017494953
LinkDB
Position
Unknown
AA seq 668 aa
MFLFKPSTDNSDTYDPAKATSKYNAVKDAVWKSGEKVPFLALAKTFAAIEEHSGRLKSIE
IMSNYFCSVMHLSPDDLVKSVYMCLNKVCPDYENIELGIGPGILHKALAESTGKTLAQVK
KDIASLGDIGLYAEKSKSNQKLLVKPKPLTVSAVFDAFKTIAMMTGNQVQSKKVDKIKSL
ITSSSPIESRFIMRSLAGKMRIGLGEKSLLQALTQAYLIFKDESNAKLVGSDKFKEKLAK
KSLLLQTAYCECPNYDKIIPTLMEHGLENLSKFCFLTPGIPLKPMLAHPTKGVQDVLERL
EGAKFTCEYKYDGERAQIHLNDDKDTYIYSRNQENNTEKYPDIVKLIHEIVSPNVTNFIL
DCEAVAFDVSTKQILPFQVLSTRKRKNVDESEITVRVCLFAFDLLYLNSESLVTKDLSER
RELLRQSFNEVEGKFMLATSKDLSDVDAIQEFLEESIKSKCEGLMIKTLHDDATYEIAKR
SRKWLKLKKDYLEGVGDTLDLVPIGAYLGKGKRTGVYGGFLLACYDEESEEFQSICKIGT
GFTDEDLSSLSASLKESLVAKPKSYFLFDDSLNPDVWFEPSQVWEVKCADLSISPVHRAG
VGLLDDTKGISLRFPRFIKLREDKKPEDATTASQVVDMYRNQESVKSGDGGAEAAGTAGS
KEDENDYY
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgttcctgtttaaaccatcaaccgacaactcggacacctacgacccggccaaggcgaca
tcaaagtacaatgcggtgaaagatgcagtgtggaagagcggcgaaaaggtgcccttcctc
gccctggctaaaacctttgccgccatcgaggaacacagcggtcgactaaagagtattgaa
attatgagcaactacttttgctcagtgatgcacctctctccggatgatctggtcaagtcc
gtctacatgtgcctcaacaaggtgtgccctgactatgagaacatcgagctaggaatcggc
ccgggcatccttcacaaggcacttgccgagtcgaccggcaaaacgctggcccaagtgaag
aaggacattgcctcactgggcgacattggcctttatgcggagaaaagcaaatcaaatcag
aagctgctggtcaaaccaaagccgctgactgtgagtgccgtttttgacgccttcaaaacc
atcgccatgatgaccggcaaccaagttcagagcaaaaaggtggacaaaatcaaaagtcta
atcacctcgtcttcgcccattgagtcacgtttcatcatgcgttccctggctggaaagatg
cgcattggattgggagaaaagtcgctgctgcaggctctcactcaggcttacttgatcttc
aaagatgagagtaacgccaagttggtcggctctgacaaattcaaggagaaactggccaaa
aagtcgctgcttctccagacagcctactgtgaatgcccgaattacgacaaaatcattccg
acactgatggagcatggcctggaaaatctgtcaaagttttgtttcttgacgccgggcatt
ccgctgaagccaatgctggcgcacccgaccaagggagttcaggacgtcctggagcgactt
gaaggcgccaagttcacctgcgagtacaagtacgacggtgagcgggcgcagattcacctg
aacgacgacaaggacacctacatctacagccgaaaccaggagaacaacactgaaaagtac
cctgacatcgtcaagctgattcacgagattgtcagccccaatgtgaccaactttatcctc
gactgtgaagcggtcgcctttgatgtctccaccaagcagattctgcccttccaagtgctg
agcactcgaaagcgcaagaacgtcgacgaaagtgagatcaccgttcgcgtctgcctcttt
gcctttgacctgctgtacctgaacagcgagtcgctggtcaccaaggatctctcggagcgg
cgagagctgcttcgccagagcttcaacgaggtggagggcaagtttatgctggccaccagc
aaggacctgagcgacgtggacgccattcaggagttcctcgaggagtcgatcaagagcaag
tgcgagggtttgatgatcaagacgctgcacgacgacgccacctatgagatcgccaagcgc
tcccgcaagtggctcaaactgaagaaggactacctggagggcgtcggcgacacgctcgac
ctggtgcccattggcgcctacctgggcaagggcaagcggaccggcgtctacgggggcttc
ctcctcgcctgctacgacgaggagagcgaggagtttcagagcatctgcaagattggcacc
ggcttcaccgacgaggacctcagctcgctgtccgcctcgctgaaggagtcgctggtggcg
aagcccaagtcctactttctctttgacgactcgctcaaccctgacgtctggtttgagccc
tcgcaggtgtgggaggtgaagtgcgccgacctgtccatctcaccggtgcaccgcgccggc
gtgggcctgctcgacgacaccaagggcatctcactgcgcttccctcgcttcatcaaactg
cgcgaggacaagaagcccgaggacgccaccacggccagccaggtggtggacatgtaccgc
aaccaggagagtgtcaagtcgggagacggcggggcggaggcggcgggaactgcgggctcg
aaggaggacgaaaacgactactactaa

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