Salvelinus sp. IW2-2015 (Arctic char): 111962299
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Entry
111962299 CDS
T05762
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111962299
09124 Replication and repair
03420 Nucleotide excision repair
111962299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111962299
03400 DNA repair and recombination proteins [BR:
salp03400
]
111962299
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111962299
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111962299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
111962299
NCBI-ProteinID:
XP_023841053
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All DBs
Position
LG4q.1:29:61227333..61233439
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AA seq
275 aa
AA seq
DB search
MPYANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIH
DEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL
LSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPFDPNGKPERFYYNVETCGSLR
PETIVMSALAVLKKKLSDLQTQLSHEIQSDVLTIN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatgctaaccagccaatcgtgaaaatcacagaattgacggatgagaatgttaaa
tttgtcatagagaacaccgatctgtcggttgcaaattccatccgacgtgtctttatgtca
gaggttgcaacaatagctattgattggattcaaattgatgcaaattcttctgtgatccac
gatgaattcattgctcacagagtgggtcttatccccctcacaagtgatgatgttgtggac
aagatgcagtactccagagactgtacatgtgacgatttctgcccagaatgctctgttgaa
ctgacgctggatgttcgctgcacagaggaccagacccggcatgtgacctcacgagacctg
ctgtccaaccaccctcgagtcatccctgtgacctccaagagtcgagacaatgatcccaat
gactatgttgaacaggatgacattttgctggtgaagcttcgaaagggtcaggagctgcgt
ctcagagcttatgccaagaagggctttggcaaggaacatgctaagtggaaccctacagcc
ggcgtatcctttgagtatgacccagacaatgcactgaggcacactgtgtacccacggcca
gaggaatggccaaagagtgaatactcagagattgaggaggatgaggtgcaagccccattt
gaccccaatggcaaacctgagaggttctattacaatgtggagacgtgtggctcactgcga
cctgagaccatcgtcatgtctgctctggcagtgctgaaaaagaaactgagtgacttacag
acccaactgagccacgaaatccagagtgacgtcctcactatcaactga
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