Salvelinus sp. IW2-2015 (Arctic char): 111972334
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Entry
111972334 CDS
T05762
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111972334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111972334
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111972334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
111972334
NCBI-ProteinID:
XP_023855112
LinkDB
All DBs
Position
LG13:complement(23321594..23367023)
Genome browser
AA seq
2357 aa
AA seq
DB search
MSAVLLQALERAEITKLPKAVQNKLEKLLSDLQYEIDFLKAHQEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHYKLREEFTKINEELKSVRENNKKCEINQDKFTSEQAQFSKAKDEL
ESEKRELVHTLERRSQEVDYLSEDLQRLNDKVSEVNTTKMGLQLKLDELESSEVNIKYRE
KRMEQEKELLQGQTAWLNGELKAKSEELLALSRQKGKEILELKCSLENKEDEXNRVQDQV
TSLKTSSESLQKQTEDMISKLKEAKEQHASMEEKFRNELNANIKLSNLYKGAAADSESKS
EELSGAVEELHKLLKDAVEANKALEVKLQEMDACRIKEAAELKESISSLEKELDNANELL
SDTKLRGAASVLSEETITTMSPTAAAVAKIVKPGMKLTELYTAYVETQEVLELQRVENKR
VNKYLDDIVQEVEAKGPVLKRQRDEHERMQKSVASLSSKLEQAVTEVQRLQKVTDEANKQ
SSVLERDNHRSEVQLADMAQQIRVLLIELEEARGNHVVPDEEVNSADISSTSEVITQHLV
TFRGVEELQQQNQRLLVALRELSDAQEREETETTGTKHSELERSLEKAQAELEALREQRS
HQMQLAESIVRQRDMYRVLLAQATGVSFPQQGAATEEFSLTSTPHRSPAATPTTAMPTGI
ITMATESTEAVEAKAALRQLQEVFSSYKRERSESDKALAEQTEKLQEQVSDQRSQNAKIS
TQLEFTSKRYEMLQDNVEGYRKEIASLMEKGQKMAAVAQKNEQTVNTMTEDLRVAQEKLN
MAEGRAESLRKERDMLKLVESRLTQEKEAIQTQQRGQNMLLANLKTIQATLERSETDTRQ
RLSAQIEKQEREIGQLQKRLGHDVEQRHLLGRNQDLQLMDAKRQLETQTGLLQKTRDQLS
AAQLEMSSLRLQQVSEEGGRPSLGSQSSPSIPMGLKGLHGSKGDSEDLGGRLRQAETQAE
ELAEQLRTATSSKEQYRAMAQSLEESMDKEKQVMEQARSSMGERVKEAQEQHRHLERKLL
EAEKEKQGLQEEKRKALASVEQQVAELRRSLSSVQADHQEALQRAAVAAAQEQQAILDSQ
EQATLASEAQDKYEREMMLHAADVEALQAAKAQALQAATLRQQLEERAQRASAQLLEARV
SWEEQERILKEEMSKVASRSEELQRQNSLLHEQIQTMSSKIAATLQRQVNECPLNISLTE
QGKSQDQVLEILRFVRREKEIAESRFEVAQGESLRHRLRVEHLERELRELQESFSAERER
MQVTAKTLAQHDELMKKTETMSVLMETNKMLREEKERMEQELQQTQAKVRKLELDVMPMQ
ESNAELSEKSGMLQAEKRILEEDIKRWKARTQQLVSQQKDPEEYKRLHFEKEAHLKRIQQ
LTEETGRLKAEVTRSGGSVTSLQSQVQMLREGLGKVSSERDVLKRDVEAKNLDIQEKFRT
ITQVRKIGRRYKTQYDELKVEHDKMVSEAASTPAQEQEAQQASAQEVQGLRDSLGQSETR
TRDLEGQLDNLNKVVAEREAEVRGAQEQASGLQTELTRLRQELQEKASQEDTLRQQMSEK
EEKTRKAFVGAKQKINQLIGSKDQLQKENEELKQQREELEVRVSALKSQYEGRLSRQERE
LRDLREQQERHGEQRDEPPEQGLSKAQEQQRTTEQRGPLKTTPAADRGSASTSEPPTANI
KPTPLGAQGQSKPPVNPGNKSTPRASIRPMITPATVPTPTPTATVMPTTQVENQEAMQSS
EGPLEHVTVYGSASGSVRSTSPSVQNTNPVLAVQQNQTTAFVQPTQQQSLPHTEPANQEQ
PLAPVVIEAAPSSQVERPSTSTAVFGTVSATAGTSSMSKRPREEEQDTSTVTDTDTPQDD
PSEPPIPKKLRIIQRVDPEEPEAQEEVLAESSTEGLVPVESHEVPESSQQVVEEYPVLDE
ADEGTASQSVPVELLLSQPTEVTLSYDSPEESPQHDVIVIVTDSESEDEQEDDEEEEPDY
DEEEEEEEDEDEEDGGMGEEGEESNEGSGDGNEAYEDDYTEGADATDPGTETEESLGASD
STQRPYDSQTHSFEGSSSMEAFSSEPTSSAPRMPRSPRRAHHPLPPRLNITQELGPPAQV
QPSMRRQSVGRVPQLTPGMASSGQHYFDDDDRMVPSTPTLVVPHRSDGFAEAIHSPQVSG
VPRFRFGTPEDLISQTSHSDLGQLASQGGLGMFDSPLFLPGHEDESGGRSVPTTPLQVAA
PVSIFTEVPPSDCPEHSSLSVPMVTSSTPGQAVAGGPPPGDESDVLMEPEGDRVEVSLEP
VASQAGEMEEPAQPSDDASLPSTSQEPSSSSADTSSTQPKPSRPGPSRQLQRWTENHMRR
GTLPSRGVTGTGRRFAR
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagtgctactacaagctctggagcgcgcggagataacgaaactcccgaaagct
gttcaaaataaactggaaaagctcctctctgatctgcaatatgaaatagatttcctcaag
gcacaccaggagcaatttagagttgatagtgaacaacagttctttgaaaaagtgcagcgt
cttgagcagagtcaggaacagtttgtgacccagactgaacagcactacaaactccgagag
gagttcaccaagatcaatgaagaactcaagagtgtgcgggaaaataataaaaagtgtgaa
atcaaccaagacaagtttacatctgaacaggcccagttctcaaaagccaaagatgaactg
gagtcagagaagagggagcttgtgcatacactggagaggagatctcaggaagtggactat
ctgagtgaggacttgcagcgcctcaatgacaaagtgtcagaagtcaataccacaaagatg
gggctgcagctcaagctggacgagcttgaatcctcagaggtcaacatcaagtaccgtgag
aagcgtatggagcaggagaaggagctgttgcagggccagacggcctggctgaacggagag
ctcaaggctaagagtgaggagctgctggccctgtcacgtcagaagggcaargagatcctg
gagctcaagtgcagccttgagaacaaagaggatgagrtgaacagagtccaggaccaagtg
acaagtttaaagacttcaagtgaaagccttcagaagcagactgaagacatgatcagcaaa
ctgaaagaggctaaggagcagcacgctagcatggaggagaagtttaggaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
gaggagttgagtggggctgtagaggagctgcacaagctgctgaaggatgctgtagaagcg
aacaaggccctggaggtgaaactgcaggagatggatgcctgtcggatcaaggaggctgct
gagctgaaggagagtatctccagtctggagaaagaactggacaacgccaacgaactgctg
tccgacaccaagctcagaggtgcagcctcagtgttgtcagaggaaacgattaccaccatg
tccccaactgcagcrgccgtggccaagattgtcaaacctggcatgaagctgactgagttg
tatacggcgtatgtggagacccaggaggtgctggagctgcagcgtgtggagaacaaacgg
gtgaataagtacctggatgacatagtgcaggaggtggaggccaagggtcctgtcctcaaa
cgccagcgggacgaacatgagcgcatgcagaagtctgtggccagcctgtcgtccaagctg
gaacaggcagttacggaggtgcaacgtctgcagaaggtgactgacgaggccaacaagcaa
tcttctgtcctggagagagacaaccataggtctgaggtgcagctggcagacatggcgcag
cagatccgtgtcctactaattgagctggaggaggcacgtggcaaccacgtagtgcccgac
gaggaggtgaactctgctgacatcagcagcacgtcggaggtcatcacacagcacctggtg
acgttccgtggcgtggaggagctccagcagcagaaccagcgcctcctggtggccctccga
gagctcagtgacgcacaggagagagaggagactgagaccacaggcaccaagcacagtgag
ctggagcgtagtctggagaaggcccaggcagagctggaggctctgagggagcagcggagc
caccagatgcagctggctgagtccattgtaaggcagagagacatgtaccgtgtgctgctg
gctcaggccactggagtcagcttccctcagcaaggtgcagccaccgaggaattctccctg
acctccaccccccaccgctctccagctgccacccccaccacagccatgcccactggaatc
attactatggcgacagagtcaaccgaggcggtggaggccaaggcagccctccgacagttg
caggaggtgttctcctcctataagagggagaggtctgagagtgacaaggccctggcggaa
cagactgagaagctacaggagcaggtctctgaccagagatcacagaatgccaagatatcc
acccaactggagtttacctccaagaggtatgagatgctgcaggataatgtggagggctac
aggaaggagattgcctctctgatggagaagggacagaagatggctgctgttgcccagaag
aatgagcaaactgttaacaccatgacagaggacctgagggttgcacaggagaaactcaac
atggcagagggtcgtgctgagagcctccggaaggagagggatatgctgaagctagtggag
tccagactgacccaggagaaagaggccatccagacccaacaacgaggacagaacatgctg
ctcgccaatctcaagaccatacaggccacattggagcgctcagagacggacaccaggcag
cgcctgagcgcccagatagagaagcaggaaagagagatcggccagctgcagaagagactg
gggcacgatgtggagcaacgccacctgctgggcagaaaccaagatttgcagctgatggat
gccaaaaggcagctggagacccagacaggcctgctccagaagaccagggatcagctgagt
gctgcccagctggagatgagctctctcaggctgcagcaggtcagtgaagaaggcggtcgt
ccgtccctgggctcccaaagctccccgtccattcccatgggcctcaaaggactccatggt
tcaaaaggggactctgaggatctgggaggccgcctgaggcaggccgagacgcaggcagag
gagctggcagagcagttgaggacagccacctccagcaaagagcagtacagagccatggcc
cagagcctagaggagtccatggataaggagaagcaggtgatggagcaggctcggtcctcc
atgggggagcgtgtaaaggaggctcaggagcagcaccgtcatctggagaggaagctcctg
gaagcagagaaggagaagcagggcctgcaggaggagaagaggaaagccctggcctccgta
gagcagcaggtggctgagctgaggaggagtctgagcagtgtgcaggcggaccaccaggag
gcgctacagagggcggcggtggcagcagcccaggaacagcaggccatactggacagccag
gagcaggccacgctggcgtcggaggctcaggataagtacgagcgtgagatgatgcttcac
gctgcagacgtggaggccctccaggcagcgaaggcccaagctctgcaggcagccacgctc
agacaacagctggaggagagggcccagagagcctctgctcagctgctggaggccagagtc
tcctgggaggaacaggagaggatcctcaaggaggagatgtctaaggtggcgtctcgctct
gaggagctgcagaggcaaaacagcctcctccatgaacagattcagaccatgagcagcaag
atagccgccaccctgcagcgccaggtcaacgagtgccctctgaacatctccctcactgag
cagggaaagtctcaggaccaggtcctcgagatactcaggtttgtgcgtcgggagaaggag
atagcggagtcacggttcgaggtggcccagggagaaagtcttcgccacaggctgagagtg
gagcacctggagagagagctgagagaactgcaggagagctttagtgctgagcgggaaagg
atgcaggtgacagctaagaccctggctcagcacgatgagctgatgaagaagactgagacc
atgagtgtcctgatggagaccaacaagatgctgagggaggagaaggagaggatggagcag
gagctgcagcagacacaggctaaagtgcgtaagctggagttagacgtaatgcccatgcag
gagtccaacgctgaactgagtgagaagagcggcatgctgcaggcagagaagaggattctg
gaagaggacatcaaacgctggaaggccagaacacagcaactggtgagccagcagaaggac
ccggaggagtacaagcgtctccactttgagaaagaggctcacctcaaacgcatccagcaa
ctcactgaggagacaggcaggctcaaggctgaggtgaccaggagtggcgggtcggtgaca
tccctgcagagccaggtgcagatgctgcgtgaaggcctggggaaggtgagctctgagagg
gatgtgctgaagagggacgtggaggccaagaacctggacatccaggaaaagttccgcacc
atcactcaggtcaggaagatcggccgccgctacaagacccagtatgatgagctcaaggtg
gagcacgacaagatggtgtcagaggcagcatccacaccagcccaggagcaggaggcccag
caggcctcagcccaggaggtccagggtctgagagactccctgggacagtctgagacccgg
actagagacctggagggacagctggataacctcaacaaggtggtggctgagcgtgaggca
gaggtgcgtggggcccaagagcaggcctccgggctgcagacggagctgaccaggttgaga
caggagctgcaggagaaggcctcccaggaggacaccctcagacagcagatgtctgagaag
gaggagaagaccagaaaagccttcgtaggggccaagcagaagatcaaccagctcatcggc
tccaaggaccagctgcagaaggagaacgaggagctgaagcaacagagggaggagctggag
gtcagggtcagtgctctgaagtcacagtacgagggccgtctgagtcgacaggagagggag
ctgcgggacctgagggagcagcaggagagacatggggagcagagggatgagcctcctgaa
cagggcctcagcaaggcccaggaacagcagaggaccaccgagcagagaggaccactgaag
accaccccagctgcagacaggggcagcgccagtacctcagagccccccactgccaacatc
aagcccactcctctgggggcccagggccagagcaagccccctgtcaaccccgggaacaag
tccactccccgggccagcatccggcccatgatcacccccgccactgtgcccacccccact
cctactgctaccgtcatgcccaccacacaggtggagaaccaggaagccatgcagtcttct
gagggcccgctggagcatgtgaccgtgtatggcagtgccagcggttcagtacggtcaacc
agccccagcgttcagaacaccaacccagtgctggcggtccagcagaaccagaccacagcc
tttgtccaaccaacacagcaacagagcctgccccacactgaaccagccaatcaagagcag
cccctggccccagtcgtcattgaagctgcacccagctcgcaagtggagaggccttcgacg
tccacagctgtgtttggtacagtttcagccaccgcagggacatcctccatgtccaagaga
ccgcgtgaggaggagcaggacacctctacggtgactgacacggacaccccccaggatgac
ccgtctgaaccccccatccccaagaagctacgcatcatccagagggtagacccagaggag
ccagaggcccaggaggaggtgctggctgagagcagtacagagggattggtgcctgtagag
agccacgaggtcccagagagcagccagcaggtggtggaggagtacccagtactagacgag
gctgatgaggggacagcgtctcagtctgtccccgtagagctacttctgtcccagcccaca
gaggttacactctcatacgactcccccgaagaatcccctcagcacgacgtcatcgtcata
gtgactgactcggagagcgaggatgagcaggaggatgacgaggaagaggaaccggactat
gatgaagaggaggaggaggaggaagatgaggatgaagaggatggcgggatgggagaagag
ggagaggagagcaacgaaggtagcggagatggcaacgaggcatacgaagacgactacaca
gagggtgctgacgcgacagacccaggcacggagacagaggagagtctaggagcatcggac
tccactcagcgcccgtacgactcccagacacacagctttgagggcagcagcagtatggaa
gccttctccagtgaaccaaccagttctgctcccagaatgccccggtcaccacggagggca
caccacccgctgcccccccgtctcaacatcacccaggaactgggcccccctgctcaggta
cagccctccatgcgtcgccagtctgtaggcagagtccctcagctcacccctgggatggcc
agcagcggacagcactactttgacgatgatgacagaatggtacccagtactcctactctg
gtggtgccacaccgctctgacggctttgcagaagctatccattctccccaggtgtctggt
gttccccggttcaggttcggcaccccagaggacctgatatcccagacctcccactctgac
ctgggacagctggcatcacaaggaggtctggggatgtttgatagtcctctgttcctgcca
ggtcatgaggatgagtctgggggccgcagtgttcccaccacacccctgcaggtggctgcc
ccagtgtccatattcacagaggtcccgccctctgactgccccgaacactcctccctgtct
gttcctatggtaaccagctctaccccgggccaggcggtggctggaggaccccctcctggg
gacgagagcgatgtcttaatggagcctgagggagaccgtgtggaggtgtctctggagcct
gtggcgtctcaggcaggagagatggaggaacctgcccagccctcagacgacgcaagcctg
ccttctaccagccaggaaccctcctccagctctgcagacactagtagcactcagcccaaa
ccctctagaccaggacccagccgacagctccaacgctggacagagaaccatatgaggaga
gggacgttgccatcacggggtgtaactgggactgggaggagattcgccagatga
DBGET
integrated database retrieval system
