Salinivibrio sp. YCSC6: E8E00_12680
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Entry
E8E00_12680 CDS
T05946
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly00540
Lipopolysaccharide biosynthesis
saly01100
Metabolic pathways
saly01250
Biosynthesis of nucleotide sugars
Module
saly_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
E8E00_12680 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
saly01005
]
E8E00_12680 (rfaD)
Enzymes [BR:
saly01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
E8E00_12680 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
saly01005
]
Core region
E8E00_12680 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
KR
Polysacc_synt_2
ThiF
adh_short
Ldh_1_N
TrkA_N
NAD_binding_10
Phage_T7_Capsid
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QCF36946
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Position
I:2720664..2721608
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AA seq
314 aa
AA seq
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MIIVTGGAGMIGSNLVKALNQQGYRDIVVVDNLKDGTKFANLVDLDIADYMDKDDFLTQI
MAGDDFGPIEAVFHQGACSSTTEWDGKYMMLNNYEYSKELLHYCIERDIPFLYASSAATY
GGRDSDFIEAPDYEGALNVYGYSKQQFDNYVRRVWDDAAAHGETLPPITGFRYFNVYGPR
EQHKGSMASVAYHLNQQILNGENPKLFEGSDTFKRDFVYVGDVCAMNIWFWQQQISGIFN
CGTGRAEPFSAVANAVIAFHGKGEIEEIPFPAHLKGRYQAYTQADLTKVREAGYTATFKT
VAEGVAAYLAEINR
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgataattgtgacaggtggcgccggcatgatcggcagcaacttagtaaaagcactcaac
cagcaaggctatcgcgatattgtggtggtcgataacctaaaagacggcaccaagttcgct
aacctcgttgatctcgatatcgccgactacatggataaagacgatttcctcacccaaatt
atggcgggtgatgactttggtcctattgaggcggtttttcaccaaggcgcctgctcttcc
accacagagtgggatggtaagtacatgatgctcaataactatgagtactccaaagagcta
ctccattattgtattgagcgtgatattccgttcttatacgcctcatcagcagccacttac
ggcggccgtgatagcgattttattgaagcgcccgactatgaaggggcactcaatgtctat
ggctattcgaagcagcaattcgataactatgtccgtcgcgtatgggacgatgcggcagct
catggtgaaacactgccacccatcaccggctttcgctactttaatgtgtatggcccgcgc
gagcagcataaaggcagtatggcctcagtggcctaccaccttaaccaacaaattttaaac
ggtgaaaatcccaagctttttgaaggcagtgataccttcaagcgtgattttgtctatgtc
ggcgatgtttgcgcaatgaatatctggttctggcagcagcaaatctctgggatttttaac
tgtggtaccggccgtgctgagccattcagcgccgttgccaatgcagtgatcgcatttcac
ggcaaaggcgaaatcgaagaaattccatttcctgcccacctgaaaggccgttaccaagcc
tacacgcaagccgatctcaccaaggttcgagaggcaggctacaccgcaacatttaaaacc
gttgctgaaggtgttgccgcgtacttggccgaaattaatcgctaa
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