Sorex araneus (European shrew): 101538708
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Entry
101538708 CDS
T07854
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03020
RNA polymerase
sara03420
Nucleotide excision repair
sara05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101538708 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
101538708 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101538708 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sara03021
]
101538708 (POLR2A)
03400 DNA repair and recombination proteins [BR:
sara03400
]
101538708 (POLR2A)
Enzymes [BR:
sara01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101538708 (POLR2A)
Transcription machinery [BR:
sara03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101538708 (POLR2A)
DNA repair and recombination proteins [BR:
sara03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101538708 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
101538708
NCBI-ProteinID:
XP_004604930
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RFARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYCSWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaggaggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagtttggagtgctcagtccggacgaactgaagcgaatgtccgtgacagagggtggt
atcaaatacccagagactaccgagggaggccgccccaagcttgggggtctgatggatcca
aggcaaggggtgattgagcgaactggtcgctgccagacatgtgcaggaaacatgacagag
tgtcctggtcacttcggccacattgagctggccaaacctgtattccatgtgggcttcttg
gtgaagacaatgaaagttttacgctgtgtctgcttcttctgctctaaattgctcgtggac
tctaataacccgaagatcaaagacattttggccaagtctaagggacagcccaagaagcga
cttacacatgtctacgacctttgcaagggcaaaaacatctgtgagggcggggaggaaatg
gataacaagtttggtgtggagcagcctgaaggcgatgaggatttaaccaaagaaaagggc
catggtggctgtgggcgctatcagccccggatccggcgctctggtctggaactgtatgca
gagtggaagcatgtcaacgaggactctcaagagaagaagatcttgctgagccctgagcga
gtacatgaaatcttcaaacgcatctcagatgaggagtgttttgtactgggtatggagcct
cgctttgcccggcctgagtggatgatcgtcacagtgctacctgtgcccccactgtctgtg
cggcctgctgtggtgatgcagggctctgctcgcaaccaggatgacttgactcacaaactg
gctgacatcgtaaagatcaacaatcagcttcggcgcaatgagcagaatggtgcagcggcc
catgtcattgctgaggatgtgaagctcctccagttccatgtggccaccatggtggacaat
gaactgcctggcctcccccgtgccatgcaaaagtctggccgtcccctcaagtccctgaag
cagcgattgaaaggcaaagagggccgagtgcgagggaacctgatgggcaagcgagtggat
ttttctgcccgcaccgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgctccattgccgccaacatgacctttgcggagattgtcacccccttcaacattgac
agacttcaggaactagtgcgcaggggtaacagccagtacccaggggccaagtacatcatt
cgagacaatggtgatcgtattgacctgcgtttccatcccaagcccagtgaccttcacctg
cagactggctacaaggtggaacgacatatgtgcgacggggacattgttatctttaatcgc
cagccaactttgcacaaaatgtccatgatgggccatcgggttcgcatcttaccgtggtct
acttttcgtttgaacctgagtgtgacgactccatacaatgctgattttgatggggatgaa
atgaatttgcacctgcctcagtctctggagactcgggcagagatccaggaacttgccatg
gtcccgcgcatgatcgtcactccccagagcaaccgccccgtcatgggcattgtgcaggac
acactcaccgctgtgcgcaaattcactaagagagacgtcttcctggagcggggtgaagtc
atgaacctcctaatgttcctgtccacgtgggatgggaaggtcccacaaccagccatcctg
aaacctcgacccctatggaccggcaaacagatcttctccctcatcataccgggccacatc
aactgtatccgcacccacagcacccatcctgatgatgaggacagtggcccttacaaacac
atatctcctggggacaccaaagtagtagtggagaatggggagttgatcatgggcatcctg
tgtaaaaaatctctgggcacatcagctggctccctggtccacatctcttacctagagatg
ggtcatgacatcactcgcctcttctactctaacattcaaactgtcattaacaactggctc
ctcattgaaggtcataccattggtattggggactctattgctgattctaagacttaccag
gacattcagaacacgattaagaaggccaaacaagatgtaatagaggtcatcgagaaggcg
cataacaatgagctggagcctactccagggaacactctacggcagacttttgagaatcag
gtgaatcgcattctcaacgatgctcgagacaagactggttcctctgctcagaaatccctg
tctgagtacaacaactttaaatctatggtggtgtctggtgccaaaggatccaagatcaac
atctctcaggtcattgctgttgtcgggcagcagaatgtagagggcaagcggatcccattt
ggattcaagcacaggactctgcctcatttcattaaagatgattatgggcctgagagccgt
ggctttgtggaaaactcttacttggctggcctcacacccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcattgacacggctgtcaagactgctgagactggttatatc
cagcggcggttgatcaaatctatggagtccgtgatggtgaagtatgatgcaacagtgcgc
aactccatcaaccaggtggtgcagctacgctatggcgaggatggcctggcaggcgagagt
gttgagttccagaatctggctaccctgaagccttccaataaggcttttgagaaaaagttc
cgctttgattacaccaatgagagagctctccgccgcactctgcaggaggatctggtcaag
gatgtgctaagcaatgcacacattcagaatgagctggaaagagaatttgaacggatgcgc
gaggatcgggaggtgctcagggtcatcttcccaactggtgacagcaaggtcgtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatctttcacatcaaccctcgactc
ccctctgacctacaccccatcaaggtggtagaaggagtcaaagaactgagcaagaaactg
gtgattgtgaatggggatgatccgctgagccggcaggcccaggagaatgccacactgctc
ttcaacatccacctgcggtccacactctgctcccgccgtatggctgaggagtttcggctc
agtggagaggccttcgactggttgcttggtgagatcgagtccaagttcaaccaagccatt
gcccatcctggggaaatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgaccttgaacaccttccactatgctggtgtatctgccaagaatgtgacactggga
gtaccccggcttaaggagctcattaatatttctaagaaaccgaagaccccctcccttacc
gtctttctgctgggccagtctgctcgagatgctgagagagctaaggacattctctgccgc
ctggaacatacgacattgaggaaggtgactgccaacacagccatctactatgaccccaac
cctcagagcacagtggtcgcagaggatcaggaatgggtgaatgtctactatgagatgcct
gactttgatgtggctcgaatctcgccctggcttttgcgggtggagctggaccggaagcac
atgactgaccggaagttgaccatggagcagattgctgaaaagatcaatgctggttttggt
gatgatttgaattgtatctttaacgacgacaatgcagagaaattggtgctccgaatccgc
atcatgaatagtgatgaaaacaagatgcaagaggaggaagaagtggtggacaagatggat
gatgatgttttcttgcgctgcattgagtccaacatgctgacagatatgaccctgcagggc
atcgagcagatcagtaaggtgtacatgcacttgccacaaacagacaacaagaagaagatc
atcatcacagaggatggggagttcaaggccctgcaggagtggatcctggagacggatggt
gtgagcttgatgcgggtgctgagtgagaaggacgtggaccccgttcgaaccacgtccaat
gacattgtggagatatttacggtgctgggcattgaagctgtgcgaaaggcattggagcgg
gagctgtaccatgtcatctcctttgatggttcctatgtcaattaccgacatttggcactc
ttgtgtgataccatgacctgtcgcggccacttgatggctatcaccagacatggagttaac
cgccaggacactggccctctcatgaaatgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcacacggggagagtgaccccatgaagggagtgtctgagaatatcatgctg
ggccagctagctccagctggcactggctgttttgacctcctgcttgatgccgagaagtgc
aaatatggcatggaaatccccaccaatatccctggcttgggggctgctggacccactggc
atgttctttggctcagcacccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggtgcaactccagcctattgttcctggtcgcccagtgtaggaagcggaatgacc
ccaggtgcagctggcttctcccccagcgctgcttccgatgccagtggtttcagtccaggc
tattctcctgcctggtctcctaccccaggctccccaggctccccagggccctccagcccc
tacatcccatcaccaggtggtgcgatgtctcccagctactcaccaacatcacctgcctac
gaacctcgttcgcctgggggctatacaccccagagtccctcgtactcccctacttcacct
tcttattcccctacatctccatcctattctccaaccagccccaactacagccccacatct
ccgagctactcgccgacctctcccagctactcgccgacctctcccagctactccccgact
tctccaagttactctcctacctctcccagctactctccaacttccccgagctactccccc
acatcacccagctactctccaacttctcccagctactccccgacttctccaagttactcc
ccaacttctcccagctactccccaacctctccaagctattccccaacatcaccgagctac
tctccaacatctccgagctattcaccaacgtctccaagctactcaccaacttctccaagt
tactcacccacgagtcctaactattcaccgaccagtcccaattacaccccaacatctccc
agctatagtccaacatcacctagctactcgcccacaagccccaactatacaccgacaagt
ccgaactacagcccaacttctccaagctactcgcccacctcaccaagctactcgcccact
tcaccaagctactccccttcaagcccacgatacacacctcagtctccaacctataccccg
agctctcccagctacagccccagctctcccagctacagtcctacctcaccgaaatatact
ccaacaagtccttcctacagtcccagctcaccagagtataccccaacttctcccaaatac
tcaccaaccagcccaaagtactctcccacttctcccaagtactcccctaccagccccact
tactcacccaccaccccaaaatactcaccaacctctcctacatactcaccaacctctcca
gtttacaccccaacatcccccaaatactcacctactagccccacttactcacccacctcg
cccaagtactcgcctactagccccacctattctcccacctcccccaaaggttccacttac
tcacctacttcgcctggctactcgcccaccagccccacgtacagtctcaccagcccggcc
atcagcccggatgacagtgatgaggagaactga
DBGET
integrated database retrieval system
