Sorex araneus (European shrew): 101545075
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Entry
101545075 CDS
T07854
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara04064
NF-kappa B signaling pathway
sara04514
Cell adhesion molecules
sara04668
TNF signaling pathway
sara04670
Leukocyte transendothelial migration
sara04933
AGE-RAGE signaling pathway in diabetic complications
sara05143
African trypanosomiasis
sara05144
Malaria
sara05417
Lipid and atherosclerosis
sara05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
101545075 (VCAM1)
04668 TNF signaling pathway
101545075 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
101545075 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
101545075 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
101545075 (VCAM1)
05143 African trypanosomiasis
101545075 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
101545075 (VCAM1)
05418 Fluid shear stress and atherosclerosis
101545075 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101545075 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sara04090
]
101545075 (VCAM1)
04091 Lectins [BR:
sara04091
]
101545075 (VCAM1)
CD molecules [BR:
sara04090
]
Proteins
101545075 (VCAM1)
Lectins [BR:
sara04091
]
I-type lectins (Siglecs)
101545075 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
ICAM1_3_5_D2
ICAM_N
Ig_6
C1-set
Ig_4
Adhes-Ig_like
Ig_5
Motif
Other DBs
NCBI-GeneID:
101545075
NCBI-ProteinID:
XP_004614712
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MPRKMAGSFGASKILWMVFAASQAFKIEILPEDKIVAQIGDSVSLTCSTTGCESPTLSWR
TQIDSPLNAKTRNEGTKSTLIMDPVSFGNEHSYLCTAICESKILEKVIPVEIYSFPKDPE
ISLSGPLEIGQPVTVTCSVADVYPFDRLEMDLIKGNKLLKNQEFLEDMNSKSLETKSLEV
TFTPNKEDIGKFLVCRAKLHMDEIDSEPRERETTKKLQVYSSPKNTFIVVKPPGKLQEGD
SVTMTCASEGLPAPQLFWSKKLENGDVQVLSENATLTLIAMRVEDSGIYICEGVNPGGKH
REEVELIVQEKPFTTEIYPGSQIAAQIGDSLALTCEARGCDSPSFSWRTQMDSPLGGRVT
SEGTKSTLTLSPVGFQHEHSYLCTVTCGQKKLEKGTQVELYSFPSDPEIELSDLLVTGNP
VTVSCKVQNVYPSDRLEIQLLKGEHIIKNKDFLEDIDKKSLETKSLDITFTPSMEDTGKV
LVCLAKLQIDEMEFEPKQRQSTHTLSVNVPPKDMNILVRPSSILEEGSSVNMTCSSDGFP
VPKVLWSRQLSNGNLQPLSENTTVTLISAKMEDSGIYVCEGFNPAGISRKEVELIVQVAP
KDIQLTAFPSESVKEGDTVIISCTCGNIPKTWIILKKKAETGDTVLKSKDGAYTIHKAQL
GDAGVYECESKNEVGLQLRSLTLDVKGNQNIKEYFSPELLVLYCASSLIIPAIGMIIYLA
RKANMKGSYSLVEAQKSKV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggaaaatggccgggagttttggagcctcaaagatactttggatggtgtttgca
gcctctcaagcttttaaaatcgagatcttgcctgaagacaaaattgttgctcagattgga
gattcagtttcactgacttgcagcactacaggttgtgagtcccccacgttgtcctggcga
actcagatagacagtccgctgaatgccaagacgagaaatgaagggaccaagtccaccctg
atcatggatccagttagttttgggaatgagcactcgtacctgtgcacagcgatttgtgag
tctaaaatactggaaaaagtaattccggtggaaatctactctttccctaaggacccagag
atctctttgagtggccctctggagatcgggcagccagtcaccgtcacatgttcggttgcc
gatgtttacccatttgacagactggagatggatttaataaagggcaacaaactcctgaag
aatcaggaatttctggaggatatgaattcaaagtctctggaaaccaaaagtttggaagta
acctttacccctaacaaagaggatattggaaaatttcttgtttgccgtgctaaattacac
atggatgaaattgattctgagcccagagaaagggaaactacaaaaaaactgcaagtctat
agctcacccaagaacacatttatagtcgtgaagccccccgggaagcttcaagaaggtgac
tcagtgacaatgacatgtgccagcgaaggtctaccagctcctcagcttttctggagcaag
aaactagagaatggggatgtccaggtcctttctgagaacgcaactctcactctaattgct
atgagggtagaagattctggaatttatatatgtgaaggagttaatcccggtggaaaacac
agagaagaggtggaattaattgtgcaagagaagccattcaccacggagatctaccccggg
tcccagattgcggctcagattggagactcgctggcgttgacatgtgaggccagaggctgt
gactccccgtctttctcctggaggactcaaatggacagcccgctgggcggaagggtgacg
agtgagggtaccaagtccacgctgaccctgagccctgtgggctttcagcatgaacattcc
tacctgtgcaccgtgacgtgtggacaaaagaagctggaaaagggaacccaggttgaactc
tactcattccctagtgacccagaaattgaactgagtgatctactagtgactggcaatcca
gtcactgtgagctgcaaggttcagaatgtatatccttcggatcggttagagattcaacta
ctgaagggggagcatattataaagaataaagactttctggaagacatagataagaaatcc
ttagagaccaagagtttggacataaccttcactccttccatggaagatactggaaaagtt
cttgtgtgtctggctaagttacagattgatgaaatggaatttgaacccaaacaaaggcaa
agtacacacacactttctgttaatgttcctcccaaggatatgaacatattggtgagaccc
tcctccatcctggaagaaggtagttctgtgaatatgacctgctctagtgatggatttcca
gttccaaaagtcctgtggagcaggcagctaagtaatggaaatctgcagcctctttcagag
aatacaactgttaccttgatttctgcaaaaatggaagattctggtatttatgtgtgcgaa
gggtttaacccggctggaataagcagaaaagaagtagaattaattgtccaagttgctcca
aaagacatccaacttacagcttttccctctgaaagtgtcaaggaaggagacacagtaatt
atctcctgtacatgtggaaatattcccaaaacttggatcatcctgaagaaaaaagcagag
acgggagacactgtgctaaagtctaaagatggtgcatacactatccacaaggcccagtta
ggagatgcaggagtgtacgaatgtgaatctaaaaatgaggttggcttgcagttaaggagt
ctaacacttgatgttaaaggaaaccaaaacattaaggagtacttttctccagagctcctt
gtgctctattgtgcatcctctttaataatccctgccatcggaatgatcatttatcttgca
agaaaagccaacatgaaagggtcctatagtcttgtagaagcacagaaatcaaaggtatag
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