Salmo salar (Atlantic salmon): 100380393
Help
Entry
100380393 CDS
T04363
Symbol
cdkal
Name
(RefSeq) CDK5 regulatory subunit-associated protein 1-like 1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sasa03016
]
100380393 (cdkal)
Enzymes [BR:
sasa01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
100380393 (cdkal)
Transfer RNA biogenesis [BR:
sasa03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
100380393 (cdkal)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
100380393
NCBI-ProteinID:
NP_001167148
UniProt:
C0HA71
LinkDB
All DBs
Position
Un
Genome browser
AA seq
562 aa
AA seq
DB search
MSSTCDSLIDDIEDMVSADDPTPQERQYARKSIIPRARKRNTQQTTEVLHADSVIPGMQK
IWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDN
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERARQS
FQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
SKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGITIATDIICG
FPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRTKELSALFH
SYNPYHHKIGETQQVLVTEESFDAQYYVAHNKYYEQVLVPKRSEFKGKMIEVEIFEAGKH
FLKGRPLDGSEVFTPSIAEPLQKGEVSGLTQLSLQQNGSVPSSGVLTASWSPWSLDREGL
KLLSISLAVVAILVVVMWEKLH
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctacttgtgactccctgatcgatgacattgaggacatggtgtcagctgacgac
ccgactccacaggagaggcagtatgccaggaagagcatcatccccagagccaggaagaga
aacacccagcagactacagaggtgctgcatgcagacagcgtgatccctggcatgcagaag
atatggatgagaacttggggctgctcccacaacaactcagacggggaatacatggctgga
cagctggcagcgagcggatacaagatgacagaggacccagcagaggctgatctgtggctg
ctcaacagctgcactgtgaaaaacccggccgaagatcacttcagaaactccatcaagaag
gcccaggagcaggataagaaggtggtggtggctggatgtgttccccaggcccagcccagg
atggactaccttaaaggactcagcatcatcggggtccagcagattgaccgtgtggtggag
gtggtggacgaggctgttaaaggtcactcagtgcgtctgctggggcagaagaaggacaac
gggaagcgtctcggcggagccagactggatctgcccaagattagaaagaaccctctgata
gagatcatttcaatcaatacaggatgtctgaatgcgtgtacgtactgtaaaaccaagcat
gccagaggagacctggccagctaccctgtagaggaactagtggagagagccagacagtcc
ttccaagagggtgtgtgtgagatctggctgaccagtgaggacaccggggcatatgggaag
gacatcgggacagacctgcccactctgctatggagactagtggaagagattcctgaagga
gccatgctgagactgggcatgaccaaccctccatacatcctggagcacctagaggaaatg
tctaagatcctgaaccatcctcgtgtgtatgccttcctccatgtcccggtgcagtctgcc
tccgacagcgtcctgatggatatgaagagggagtactgcgctgacgacttcaggcgcgtt
gctgacttcctaaaagacaaggttcctggtatcaccatcgcaacggacatcatctgtggt
ttcccaggggagacggatgctgacttccaggagacatgtgacctggtgaaggagtatcgc
ttccccagcctcttcatcaaccagttctacccccggcctggcacccccgccgccaagatg
gaccaggtccccgcccaactgaaaaaacaacgaaccaaagagctgtcggccctgttccac
tcctataacccctaccaccacaagattggggagacccagcaggtgcttgtgactgaggag
tcctttgacgcccagtactatgtggctcacaacaaatattatgagcaggtgcttgtgccc
aagaggtcagagttcaaggggaagatgattgaggtggagatcttcgaggcaggcaaacac
ttcctgaagggaagaccgctggacggctctgaagtgttcactccctccatcgccgagccg
ctgcagaagggagaggtgtctgggctaactcagctgtcccttcagcagaatggatccgtc
ccctcctccggcgtgctgactgcatcctggagcccctggagcttggacagagaggggctg
aagctgctgtccatcagcctggctgtggtggctatcctagtggtcgtcatgtgggagaaa
ctccactga
DBGET
integrated database retrieval system
