Salmo salar (Atlantic salmon): 106577550
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Entry
106577550 CDS
T04363
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03020
RNA polymerase
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106577550
09124 Replication and repair
03420 Nucleotide excision repair
106577550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106577550
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106577550
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106577550
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106577550
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106577550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106577550
NCBI-ProteinID:
XP_014011143
UniProt:
A0A1S3N6M0
LinkDB
All DBs
Position
ssa18:47822903..47839406
Genome browser
AA seq
1883 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEHDSEDITKEKGHGGC
GRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPKFSR
PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIA
EDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNG
DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRM
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMGHDV
TRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQ
NMATLKPSNKAFEKKFRYDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKEDRE
ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVQGVQELSKKLVIVN
GEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL
GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
EGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELNH
VISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASS
HGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFG
AAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPSSPRFTPQSPNYTPSSPSYSPS
SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY
SPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPLSPGYS
NPSPSFTLTSPAISPDDSDEENN
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgtcacagaagggggaattaag
taccccgagaccacagaaggagggcgtcctaaactcggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggtaacatgacagaatgccca
ggccacttcggccacatagagctggcgaagcctgtgttccacgtgggtttcgtcaacaag
attatgaaggtcctccggtgtgtctgctactcctgttccaagctgctggtcgacacgaat
aatccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtatgacttgtgtaaaggcaagaacatctgcgagggtggagaggagatggataac
aagtttggagtggagcacgacagtgaggacatcactaaggaaaagggccatggtggctgc
gggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgccgagtggaagcac
gtgaatgaggactcgcaggagaagaagatcctgctgagccccgagcgtgtctacgagatc
ttcaaacgcatctcggacgaggaggacgtcatcctgggccttgatcccaagttctcccgg
cccgagtggatgattgtcacggtactccctgtgccgccgctagctgtccggcccgccgtc
gtcatgcagggctccgcccgtaaccaggacgacttgacacacaagctggccgacatagtc
aagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccacgtcatcgct
gaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgagctgccaggc
ctgcccagggcaatgcaaaaatcgggccgcccgctcaaatccttaaaacagcgtctgaag
gggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttctctgcccga
accgtcatcacccccgaccccaacctgcagatcgaccaagtgggcgtcccgcgctccatc
gccgccaacatgactttcccagaaatcgtcacaccctttaacattgacaggttacaggag
ctggtgcgcagaggcaacagccagtatccaggagccaaatatatcatccgagacaacggg
gacagaatcgacctgcggttccaccccaaaccaagtgaccttcacctccagatcggctac
aaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacagcccacttta
cataaaatgtctatgatggggcacagagtccgaatccttccctggtccaccttccgaatg
aacctcagtgtaaccactccgtacaatgctgacttcgacggggatgagatgaacctgcat
ctccctcagtccctggagacgagagctgagatccaggagcttgccatggtgcctcgtatg
atcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacaccctcaccgcc
gtgcgcaagttcaccaaaagggacgtcttcctagagaggggcgacgtgatgaacctcctg
atgttcctgtccacttgggacggcaaggtgccccagccagccatcctgaagccccggcca
ctctggactggcaagcagatcttcagccttatcatcccgggccacatcaacgccatccga
acacacagcacccacccagacgaggaggacagtgggccctacaagcacatctctcctggg
gacaccaaggtgattgtggagaacggggagctgatcatgggcatcctgtgtaagaagtca
ctgggtacctctgctggctccctggtccacatctgtttcctggagatgggccacgacgtc
acccgcctcttttactccaacatccagacggtggtcaacaactggctgctcattgagggt
gcctctatcggtattggtgactccattgctgatgcaaagacgtacctggacatccagaac
accatcaagaaggccaaacaggatgtaatagaggtcattgagaaggcccacaacaacgag
ttggagcccacccctggcaacacgctgaggcagacctttgagaaccaggtgaatcgcatc
ctaaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtctgaatacaac
aacttcaagtccatggtggtggccggctccaaaggctccaagattaacatctctcaggtt
attgcggtggtggggcagcagaacgtggagggtaagcgtatccccttcggcttcaagcac
cgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggcttcgtggag
aactcgtacctggccggcctcacgcccacagagttcttcttccacgccatgggaggcagg
gaggggcttatcgacacggctgtgaagaccgccgagactggttacatccaacgtcgtctg
atcaagtccatggagtctgtgatggtgaagtacgacgccacggtgaggaactccatcaac
caggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtggagttccag
aacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagatatgactgc
accaacgagcgggctctgaggcgcaccctgcaggaggacgtggtgaaggacgtgatgacc
aacgcccaggtgcagagtgccctggagagggagtatgagaagatgaaggaggacagggag
attctgagggccatcttccccactggggacagtaaggtggtgctgccgtgcaacctggcc
aggatgatctggaacgcccagaagatcttcaggatcaacccccgcacccccacagacctc
aaccccctacgggtcgtacagggtgtccaggagctgagtaagaagttggtgattgtgaac
ggcgaggaccacctgagcagacaggcccagcagaacgccacgctgctcttcaacatccac
ctgcgctccacgttgagctcccgacgcatgacggacgagttcagactgagcaccgaggcc
tatgactggctgctgggggagattgagtccaagttcaaccaatccatcgcccatccgggc
gagatggtgggggcgttagctgcccagtcgctgggagagcccgccacccagatgaccctg
aacaccttccactacgccggcgtgtcggccaagaacgtcaccctgggcgtgccgcgtctc
aaggagttgatcaacatctccaagcggcccaagaccccgtccctcaccgtgttcctgctg
ggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcgcctggaacacact
accctcagaaaggtgacggccaacacggccatctactacgaccctaacccccagagcaca
gtggtgacggaggaccaggagtgggtgaacgtctactatgagatgcccgacttcgacgtg
acccgcatctccccctggctgctccgcattgagctcgaccgcaaacacatgactgaccgc
aagctgaccatggagcagatcgctgagaagatcaatgcaggtttcggagacgacctgaac
tgtatcttcaacgacgacaacgccgagaagctggttctgcgaatccgcatcatgaacagc
gacgagaacaaattccacgaggatgaggaggtggtggacaagatggacgacgacgtgttc
ctgaggtgcatcgaatccaacatgctgacggacatgacgctgcagggcatcgagcagatc
agcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcattacggag
gagggagagttcaaggccctgcaggagtggatcctggagacagacggcgtaggactgatg
agggtcctcagcgagaaggacgtggaccccgtcagaaccacctccaacgacatcgtggag
atcttcacggtgctgggtatcgaggcggtgcgcaaggctctggagagggagttgaaccac
gtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctttgcgacacc
atgacgtgccgcggtcacctgatggccatcacgcgtcacggcatcaacagacaggacacg
ggacccctcatgaagtgctcctttgaggagactgtggatgtgctgatggaggcgtcgtcc
cacggggagagtgaccccatgaagggtgtgtctgagaacatcatgctgggccagctggcc
ccctgcgggacgggctgcttcgacctgctgctggacgctgagaagtgcaaatacggcatg
gagatcccaaccaacatccctggcattagcgtggctggacccaccggaatgttctttggc
gctgcgcccagccccatgagtggcatgtctccagccatgaccccctggaacactggagcc
acccccgcctacggtgcctggtcccccagcatcggcagtgggatgacccctggagctgca
ggcttttctcctagcgcagcgtccgacgccagtggcttctctccgggctactccccggcc
tggtcccctacccctggatctcctgggtcccctggaccagccagcccctatatcccctct
ccaggaggtgccatgtctcccaactactcccccacctccccggcctacgagccccgctct
cctgggggatacaccccacaaagcccgggctactccccaacgtccccctcctactcccca
acctccccctcttactcccccaccagccccaactacagccccacctcaccctcctattca
cccacctcccccagctactccccgacctccccctcatactctcctacgtcccccagttac
tcccctacctcaccctcttactcccccacctccccctcctactcccccacatctccctct
tactcccccacctctccaagctacagcccctcttcacccaactacaccccaacatcgccc
agctactcccccacctccccctcctattctcccacctctccatcctactctccctctagc
ccgcgcttcaccccccagtctcctaactacacccccagctctccctcctacagccccagc
tctccttcctactcgcccacctcccccaaatacacacctacgtccccctcttactccccc
agctctccagagtacacccccacctcccccaaatactcccccacctcgcccaagtactcc
ccgacctctcccaaatactcccccacctccccgacttactccccgacgacccccaagtac
agccccacgtcgcccacctactcccccacctcgcccacctacacccccaccagccccaag
tactcccccacctccccaacctattccccaacctcacccaaatactctcccacctccccc
acctactcgcccactagccccaaagggtccacctacagccccctgtcaccaggctacagc
aacccctcgcccagcttcaccctcaccagcccggccatcagcccagatgacagtgacgag
gagaacaactga
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integrated database retrieval system
