Shewanella avicenniae: JYB87_17610
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Entry
JYB87_17610 CDS
T07845
Symbol
trmA
Name
(GenBank) tRNA (uridine(54)-C5)-methyltransferase TrmA
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
savi03016
]
JYB87_17610 (trmA)
Enzymes [BR:
savi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
JYB87_17610 (trmA)
Transfer RNA biogenesis [BR:
savi03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
JYB87_17610 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_4
MTS
Methyltransf_11
Cons_hypoth95
Met_10
Methyltransf_15
PrmA
Methyltransf_31
Methyltransf_12
RrnaAD
DREV
Motif
Other DBs
NCBI-ProteinID:
QSX33500
LinkDB
All DBs
Position
3984036..3985139
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AA seq
367 aa
AA seq
DB search
MKLSSMDPALYPQQLAEKQQSLTQAFAPFSAPTLEVFASAPAHYRMRAEFRVWHDGDDLY
FCVFDQELKTNQRCDQFLPASELINEMMLELVEELKPNMVLRHKLFQVDFLSTLSGEILV
SLLYHRQLGEDWLAEAETLKQRLSQRFKVDIIGRARKQKHVLHREFVVEQLSVNGRQYTY
QQVENSFTQPNAKVAEKMLEWALDCTQNSQGDLLELYCGNGNFSVALAQNFNKVLATELA
KPSVESAQYNISANKIENLQIIRMSAEDFSDAITGKREFKRLGDIDLQSYQCNTIFVDPP
RAGLDQATLAMVQGYEHILYISCNPETLANNLEQLSQTHQIVRFAMFDQFPYTEHVEAGV
MLSRKPA
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctcatcaatggatccagcactgtatccacagcaattagctgaaaagcagcaa
tcgctgacacaggcgtttgcgcctttttctgcgccaacgttggaagtatttgcatcagcg
ccggcccattatcgtatgcgagcagagtttcgcgtgtggcacgacggtgatgacctttat
ttctgcgtttttgatcaggaactgaaaaccaatcagcgctgtgatcagtttctgcctgca
agcgaactgatcaatgagatgatgctggagctggttgaagaacttaaacccaatatggtg
ttgcgccacaaattgttccaagtagattttctctccacgctttctggcgagattttggtg
tcgctgctttatcatcgtcaactgggtgaagattggttggctgaagcagaaacacttaaa
caacgtttatcgcaacggttcaaagtcgatattattggtcgcgcccgcaaacagaagcac
gtgttgcaccgcgagtttgttgttgagcaactgagtgtgaatggtcgccaatatacctat
caacaagtcgaaaacagctttactcagccaaacgctaaagtggctgagaagatgttggaa
tgggcgctcgactgtacccaaaacagtcaaggcgacctgcttgagctttactgtggtaac
ggcaacttctcggtagccttggcgcaaaacttcaataaagtattagcgaccgagttggcc
aagccatcggtagaatcggcacaatacaatatttccgccaataagattgaaaacctgcag
atcattcgtatgtcggcggaagattttagtgacgcaattaccggtaagcgtgaatttaaa
cgtttaggtgacatcgacctgcaaagctatcagtgcaacaccatctttgtcgacccacca
cgtgctgggttagatcaagcgactctagcgatggtgcagggctatgagcacatcctttat
atctcgtgtaaccctgagacactggcgaacaacctagaacagttaagccaaactcaccag
atagttcgctttgctatgtttgatcagtttccctacacagaacacgtggaagctggggta
atgctgagccgaaaaccagcctaa
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