Sphingobium baderi: ATN00_17040
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Entry
ATN00_17040 CDS
T04194
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sbd
Sphingobium baderi
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbd03009
]
ATN00_17040
Enzymes [BR:
sbd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
ATN00_17040
Ribosome biogenesis [BR:
sbd03009
]
Prokaryotic type
ribosomal protein modification factors
ATN00_17040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ALR22724
UniProt:
A0A0S3F4N8
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All DBs
Position
3500755..3502131
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AA seq
458 aa
AA seq
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MATKIPSPPKVGMVSLGCPKALVDSERILTKLRSDGYQMSPDYSGADVVLVNTCGFLDSA
KEESLEAIGEAIAENGRVIVTGCMGNEAELIRAKFPQVLAVTGAHQYEAVVSAVHEASPP
VPNAFVDLVPEGGLKLTPRHYSYVKISEGCNHRCSFCIIPSLRGDLVSRRVDAVLREAEK
LVHAGTKELLIISQDTSAYGVDTRHEARNWKGREVRAHMTDLARELGQLRTGEGTPPWVR
LHYVYPYPHVDQVIPLMAEGLLTPYLDIPFQHASPNVLKAMKRPANEAKVLDRIRKWRDI
CPDIAIRSSFVVGFPGETEADFEYLLNWLGEAQLDRVGAFRFEPVEGAAANALPDVVPEE
VKEERYQRIMEKTAAISAAKLAAKVGRTMPVIIDEIGEPDEDGSIGATARSQADAPEIDG
NVFLRDVGEGRQPGDIVTVLIEDADEHDLYGVPQGSTA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaaatcccttcgccacccaaggtcggcatggtgtcgctcggctgtcccaag
gccttggtggatagcgagcgcatcctgacgaagctgcgttccgatggctatcagatgtcg
ccggactattccggcgcggacgtcgtgctggtcaacacctgcggatttctcgattcggcg
aaggaagaatcgctggaggccattggcgaggcgatcgcggaaaatggccgcgtcatcgtc
accggctgcatgggcaatgaagcggagttgatccgcgcgaaattcccgcaggttctggcc
gtcaccggcgcgcatcaatatgaggcggtggtgagcgcggtgcatgaagcatcgccgccc
gtgcctaacgcctttgtcgatctggtgcccgagggcgggctgaagctgaccccgcgccac
tatagctatgtaaagatcagcgaggggtgcaatcatcgctgttccttctgcatcatccct
tcgctgcgcggcgatctggtcagccgcagggtggatgcagtgctgcgcgaggcggaaaag
ctggtgcatgcgggcacgaaggaattgctcatcatcagccaggacacatcggcttatggc
gtcgatacccggcatgaggcgcgcaattggaagggccgcgaggttcgcgcgcatatgacc
gatctggcgcgggaactgggtcagcttcgtaccggcgaggggacgccgccatgggtgcgg
ctccattatgtctatccctatccgcatgtggatcaggtgatcccgctcatggccgaagga
ttgctgacaccctatctggacattccgttccaacacgcttcgcccaatgtgctcaaagcc
atgaagcgcccggccaatgaagccaaggtgctggaccgaatccgcaaatggcgtgacata
tgcccggacatcgcgatccgatcgtccttcgtcgtcggcttccctggcgagacggaggcg
gatttcgaatatctgctcaactggctgggcgaagcccaactcgaccgggtcggcgctttc
cgattcgagcctgtcgagggcgctgcggccaacgctttacccgatgtggtgcctgaagag
gtgaaggaagagcgctatcagcggatcatggagaagaccgccgccatctccgccgccaag
ctggccgccaaggtggggcggacgatgcccgtcatcatcgacgagattggcgaaccggat
gaggatggctccatcggcgctacggcgcgcagccaggccgacgcgccggaaatcgacggc
aatgtcttcctgcgcgatgtgggcgaaggccggcagccgggcgatatagtgacggtactg
atcgaggatgccgatgagcatgacctctatggcgtgccgcaaggctccactgcataa
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