Sorghum bicolor (sorghum): 8055803
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Entry
8055803 CDS
T01086
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
8055803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8055803
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
8055803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
AAA_22
Cadherin_2
Tudor_5
KorB_C
53-BP1_Tudor
PHD
Motif
Other DBs
NCBI-GeneID:
8055803
NCBI-ProteinID:
XP_002460193
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All DBs
Position
2:58663359..58673965
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AA seq
1304 aa
AA seq
DB search
MASRRASNGRSPLVRKQSQITAFFSSSPTRSPSPSGPSPGASKPSPSPLNPSARTRSPLA
AVSPPPPKLPPPQKQKKGKKDKEDRDAVAAVPAPLAAEVVGRRLRVYWPLDDAWYKGRVA
AYDAASRRHRVKYDDGDEEEVDLGKEKFEWEAAVEDSTPPPARKLRRLRRMSDTSVAKSP
AVAEDSAGDSTEDEDWKRDTVVEDDSEEVELDEEDEEEVVAVRSRKGKPKNSLLVSGSTP
STLSSGLTSESGSKVSKKRKNVDVASLDFAKRFTFEAVNTTRKVDPEVPMSCGKKGQTTG
NDYTALTGDAAERFGQRDAEKFKFLGEGRKDAKGRRPGSPGFDPKTLLLPPQFLKSLTGA
QRQWWEFKSHHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVN
LEKLAEKGYRVLVVEQTETPEQLELRRKEMGIKDKVVRREICAVVTKGTLIEGEHLLANP
DPSYLLSVTESHQQSSKKSQETCTIGVCIVDVSTSKFIVGQFQDDPERHGLCSILSEMRP
VEIIKPGKMLSPETEKALKNNTRKPLINELLPSTEFWDAAKTIDEIKQYYSSADKQNDAD
DIQDCVNCLPNLLCELIGAGDKTYALSALGGSLFYLRQTLLDDKILPFAEFEPLACSGLI
NNIRKNMILDAAALENLELLENMRTGGLSGTLYAQLNHCVTGFGKRLLKRWIAKPLYDRS
AILRRQSAVATFKGVGQDYAAQFRKDLSRLPDMERLLARLFSSCDENKRSSSVVVYEDAS
KRLLQQFTAALRGCQQMFHACSSISTLICTEGSQLNDLLSPGKGLPDISSILDRFRDAFD
WSEADRNGRIIPCEGCDPEYDATCYAIEEIKSSLKEYLKEQRKLLRPASVNYVDVGKDMY
LIEVPESLGGSVPRNYELQSTKKGFFRYWTPELKELILELSKAESEKESKLKGILQNLIQ
LFVEHHTEWRQLVSVVAELDVLISLAIASGYFEGPSCCPTIKESNGQEDTPTFHARNLGH
PILRSDSLGKGSFVPNDVKIGGSGNPSFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVP
AENLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTST
SDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAMERKDTKVSLCHMACQVVEGEGGLEEVT
FLYRLTPGACPKSYGVNVARLAGIPTSVLQRANEKSSDFEANYGKRHKMTKDKHVSAQSD
DVFSAIRDLFCIVKAWPCRPEDQATSISMLREVQKRAKVKAVES
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaatggccgctcgccgctcgtgcggaagcagagccagatc
accgccttcttctcctcctcccctacccgctccccgtccccctcgggcccgagccccggc
gcgtccaagccctctccgtcgccgctgaaccccagtgcgaggacgaggtccccgcttgcc
gcggtatcccctccccctcccaagctgccgccgccgcagaaacagaagaagggaaagaag
gataaggaggatcgtgatgctgtcgccgcggtgcctgcgcccttggcggcggaggtggtg
gggaggcggctgcgggtgtactggccgctggacgacgcgtggtacaaggggagggtggcg
gcctacgacgcggcttcccgcaggcaccgcgtgaagtacgacgacggcgacgaggaggag
gtcgatctcgggaaggagaagttcgagtgggaagccgccgttgaggactcgaccccgccg
ccagcgaggaagctgcggcgtctccggcggatgtctgatacctcggtggcaaagtcaccg
gctgtggcagaggatagcgctggggattccactgaggacgaggactggaagagggatact
gtcgtggaggatgattctgaggaggtggagctggatgaggaagatgaggaggaagttgtc
gcagtgcgatcacgaaagggaaagccaaagaattccttgctggtgtcaggttcaacgcca
tcgacattgagctctggtttgacatcagagtcggggtcaaaagtttcgaagaagaggaaa
aacgtggatgtggcctcattggattttgctaaaaggttcaccttcgaagcagttaatacc
acaagaaaagttgacccagaagtgccaatgagctgtggcaagaaagggcaaactacggga
aatgactacactgctcttactggggatgcagctgagcgctttgggcagcgggatgctgag
aagttcaaattccttggagaggggcgcaaagacgcaaaaggcagacgtcctggaagcccg
ggctttgatccaaaaactcttttattgccaccccagttcttgaagagtttgacaggagcg
cagagacaatggtgggaatttaaatcacatcacatggataaggttctgttcttcaagatg
ggcaaattctacgaactattcgagatggatgcacatgttggggcaaaggaccttgatctt
cagtacatgaagggtgaacagcctcactgtggattcccagagaagaatttatcagtgaat
ttggagaaattagctgagaagggttatcgagttctggttgtggagcagactgaaacacct
gagcagcttgaacttaggcgtaaggagatgggtataaaggacaaggttgtcaggcgtgaa
atatgtgcagtggtcacaaaaggaacactgatagaaggagagcacctactggcaaaccca
gatccttcatacctcctgtctgtgactgaaagtcaccaacaaagttcaaagaagagccaa
gaaacttgtaccattggtgtttgcatagttgatgtttctacaagcaaatttattgtagga
cagttccaagacgatccagagcgccatggattgtgttcaattttgtctgaaatgaggcct
gtggaaattataaagcctggtaaaatgctgagtccagaaactgagaaggcattaaagaac
aacacaaggaagcctttaataaatgagctacttccgtccacagaattctgggacgcagca
aagactattgatgagataaagcagtactacagctcagccgataaacagaacgatgctgat
gacattcaagactgtgtgaactgtctgcctaacttattatgtgagttaattggagcaggt
gataaaacatatgcactttctgctctaggaggttccttattttatttaaggcaaaccctt
ctggatgacaaaatacttccatttgctgagtttgagccacttgcatgctcggggctcatc
aacaatatccgaaagaatatgatacttgatgcagcagcgctggagaatctagaactttta
gaaaatatgagaactggtggcctctcagggaccctgtatgcacaattgaatcattgtgtt
actggatttggaaagaggttactcaaacggtggatcgcgaagccattgtatgatcgcagc
gcaatactacggcgtcaaagtgctgttgctactttcaagggagttggccaagattatgct
gcccagttccgtaaggatttgtctaggctccctgacatggaacgcctgcttgcacgcctt
ttctcaagctgtgatgaaaacaagagaagttcatcagttgttgtttatgaagatgcatca
aagagactgcttcaacagtttactgctgcacttcgggggtgccagcagatgttccatgca
tgttcttctattagtacattgatatgcacagagggatctcaacttaatgatttgctctca
ccaggcaaaggcctaccagatatctcatctattttagaccgattcagagatgcatttgat
tggtcagaagcagaccggaatggtcggatcattccttgtgaaggttgtgatcctgaatat
gatgccacttgctatgcaatagaagagatcaaatccagtctaaaagagtacctgaaggag
caacgaaagcttttgagacctgcatcggttaattatgttgatgttggaaaagatatgtac
ctaattgaagtgcctgagagtctgggaggttcagttcccagaaactatgagttgcagtct
acaaaaaagggtttctttcggtactggacgccagaactgaaagaactaatattagaactt
tcaaaggctgagtcagagaaagaatcaaaattgaaaggcattcttcagaatctgattcag
ctatttgttgagcatcacactgagtggaggcagttggtttctgttgttgctgagcttgat
gtattgataagtcttgctattgcaagtggttattttgagggaccaagttgctgtccaact
atcaaagaatcaaatggccaagaagatactcctactttccatgctagaaatcttggacat
cccattctacgaagtgattccttaggcaagggttcatttgtaccaaatgatgttaagata
ggtgggtcagggaatcccagctttattgttcttactggtccaaatatgggtggtaaatca
actctcctgcgccaagtttgtcttaccattatattggctcagattggagcagatgttcct
gcagaaaatcttgagctttctcttgttgaccgtatctttgttcgaatgggagcaagggat
catattatggctggccaaagtacattcttggtggagctcgaggagactgcctcggtgctt
tcatcagctaccaagaattctcttgtggtattagatgagcttggacggggtacatcgact
tctgatggacaagctattgcggcctcagttctggaatatctagttcatcaggtgcagtgt
ctaggcttgttttctacacactaccataggttagctatggaacgcaaggataccaaggta
tcactgtgccatatggcatgccaggtggttgagggagaaggaggtctggaagaagtaact
ttcctttatagattaacacctggtgcatgccctaaaagctatggtgtaaatgttgctcga
ttggcaggaatacctacttcagtgcttcaaagagcaaatgaaaagtcaagtgactttgag
gccaattacgggaagcgacacaaaatgaccaaagataagcatgtaagtgcacagagcgat
gacgtgttttctgccatcagggatttgttctgcattgtgaaggcatggccttgtcgtcct
gaagaccaggcaacgagtataagcatgctccgtgaagtgcagaagcgtgccaaggtaaag
gctgtggaaagttag
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