Sorghum bicolor (sorghum): 8061093
Help
Entry
8061093 CDS
T01086
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8061093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8061093
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8061093
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
8061093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PapD-like
Motif
Other DBs
NCBI-GeneID:
8061093
NCBI-ProteinID:
XP_021303065
LinkDB
All DBs
Position
9:56146643..56165796
Genome browser
AA seq
1732 aa
AA seq
DB search
MADGQPIQAASEEVDSLHFSFYSDDEIKRISIKKITKLERLDAKNLPVPGGLLDPAMGPI
NDTDTCKSCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKEQVD
RYVNELELLVKGDIVGAKNLEDSVKEAYLSEEDENITETTSGDKSSSVKDNKTWTSVQLK
EVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWLVKDTSASAVRANAIADFKLKGDGDA
HNSGDTGVSGLDEETTSPGMVSKGSINEVRRLSDDAVKEMVASSGKKHLLPTEVESILKD
LWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFFLNSLLVAPNRFRPSTNSSLGMMEHPQS
VLLSKVQEANLALQHHNASSNHMDVIRRWMDLQRSVNVLYDSSKGLVKSEKNAHGIRQLL
EKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKKLQ
EAIRNGADIHPGATHYRDKNNTYKLQAVPAKRHSVAKMLPASRGSICQPGRDPNCEFESK
VVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGERTLRMHYANCSTYNADFDGDEMNV
HFPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKRDTFLTREEYSQL
VFGSCMPSSNRGSRHPGKKVSAIEDYGTLELVRPAIWKPKPLWTGKQVITTILNHLTKGR
PPFTVEQKGKIPKEYLKEGDPFAQEEKDSPAQQQEEDPSAQKEKEDSLARKEDPSAQKEK
QEDPSAQKETQEDPSAKKETQEDPSAQKEKDSSVKKEKEKQNRIWKQKQKQKQDDCSELV
LYIHDNELIKGIVDKAQFGKYGIVHTVHELYGADIAGILLSTFSRLFTLFLQLHGFTCGI
DDLLLLQKADKLRSDILSGSEKCSEEVHLKFTGAGEDLKGDPVKLHMEVEKAVRSKGESD
TGSLDNLMKSALSGITTEVNKNLFPDGLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLG
QQELEGKRVPRMVSGKTLPCFPPWDISSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVD
TAVKTSRSGYLQRCLMKCLESLKVSYDHTVRDVDGSIVQFQYGEDGVDVLKTSFLKEFKE
LANNRKAVLAKLGGHSTKPTYNQYITKLPTKLNSDAEEFLEHSKEFQHCRYNIEAEELKE
LLEVKYLSSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGDLNVTLGIPRLKEILMT
ASANIKTPVMKCPLLEHTSMDDAKMVAAKLMRVRVADIVEKIEVCTVPFYNCNGHVSTLY
KLQMKLYPEDQLESGLTVNECQATLRTVFVDAMEHAIEKHLDLLHKINEIRAVKVKDTDG
SLSDGGEESESRHADGGDTVTSDDDDDQNDNDDDLGTDAEKMKRQEKDEMEYDDDTENEE
GMGSESEESDDDPAGDDSQEADKEHKIKSETTSVDDLSYSAKKGKKSKDNHGTAKLEEKN
QNKGRLGDQKQDQITKRRKKLTRTIHVESNDLDFEIHYAFLDEPHILLAQIAKKIARTIF
VKACNNIDDCKIVKPRDDHARIQTAGVNFEVVWNLNEYISVHDITSNDIHAILKTYGVEA
ARNTIINEVSGVFKPYGIDVDMRHLSMIADFMTLDGGYRPMNRIGIGQFSTSPFGKMTFE
TATKFIVEAATHGEADFLECPSASVCLGKPPKVGTGIFGLLQNLELEQPMET
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgggcagcctattcaggcagcatcagaggaagtggattcactccacttcagc
ttctatagtgatgatgaaattaagaggatcagcattaaaaagatcaccaagttggagcgc
cttgatgccaaaaaccttcctgtgccaggtggattactggaccctgcaatgggacctatc
aatgatactgatacctgcaagagttgtggtcagaattctgttcgttgccctggtcacttt
ggtcatattgagttggcaaaaccattattcaatcctttgctgtttatgagtctgagaaac
cttctccatgtcacatgcttctattgtcacaagttccgcttgaacaaagaacaggttgac
agatatgtgaatgaacttgaacttttagtaaagggtgatattgttggtgctaaaaatttg
gaagactcagttaaagaagcatatctttctgaggaagatgaaaacattaccgagaccact
tcaggtgataaatcatcttctgtgaaagacaataaaacctggacatcggttcaattgaaa
gaggttttgtctattttttccaagataatgaaaaagagacagacgaagtgtgcaaaatgc
gatatgaagagcccaacaatctcaagtcctatatttggttggctggtcaaggacacaagt
gcttctgctgtaagagcaaatgcaattgctgattttaaactcaagggagatggtgatgct
cacaactcaggggacacgggggtttctggtcttgacgaagagacaacttcacctggaatg
gtctccaaaggatcaatcaatgaagttagacgcctttctgatgatgcagttaaagagatg
gtagcatcatcaggaaagaagcatctattgcctacagaggttgaatctattctcaaggac
ttgtggaacaatgaagccaggttctgcatgttactctgtgacttccagaagaatacgtta
agtgaaccagaaaagagaaggggttatgaaatgtttttcttgaatagtctccttgtggca
ccaaatagattccgcccatcaactaactctagtcttggaatgatggaacatcctcaaagt
gttctgctaagtaaagtgcaagaagccaatcttgcgctacagcatcacaatgcatcttct
aaccatatggatgttattcgaagatggatggatctacaacggagtgtaaatgtgttatat
gatagtagcaaaggccttgtaaaaagcgagaagaatgctcatggtatacgacaactattg
gaaaagaaagaaggaattcttcgacagaagatgatgggaaagagggttaattatgcatgc
cgatctgtcatatctccagatccgtacttggctgttaatgaaattggcattcctcctgtt
tttgcgacacggttgacatatcctgagaaagtaacaccctggaataccaaaaaactccaa
gaagctataaggaatggtgctgatatccatccaggtgcaacacattacagggacaaaaat
aacacgtataagttacaggcagtccctgccaaacgccattccgttgctaagatgctacct
gcatccagaggatcgatttgtcagccagggagagatcctaattgtgaatttgaaagcaag
gttgtatatcggcatcttcaagatggtgacattgtacttgtcaataggcagcctactctt
cacaagcccagcatgatggctcattttgttcgtgtgttacctggagaaaggacgttacga
atgcactatgccaattgcagcacctacaatgctgattttgatggagatgagatgaatgtg
cactttccacaagatgaaatatcccgtgctgaggccatgaatattgttgatgcaaacaag
caatacattggtcctaggagtggggatgctgtcagaggtctcatacaggaccacattatt
ggtgctgtactactgacaaaacgagacacgtttctaactcgtgaagagtatagtcagctt
gtctttgggtcttgtatgccatcctcaaatcgtggctctcgtcaccctggtaaaaaggtg
tctgctattgaggattatggtacactcgaacttgtccgtcctgctatttggaagccaaaa
cccttatggacaggaaaacaggttataacaaccatcttgaatcatttaacaaaaggtcgt
cctccatttactgtggagcagaagggaaaaataccaaaagaatatctaaaagaaggagat
ccttttgctcaagaagaaaaagattctcctgctcaacaacaagaagaagatccttccgct
caaaaagaaaaagaagattctttggctcgaaaagaagatccttctgctcaaaaagaaaaa
caagaagatccttctgctcaaaaagaaacacaagaagatccttctgctaaaaaagaaaca
caagaagatccttccgctcaaaaagaaaaagattcttcagttaaaaaagaaaaagaaaag
caaaacagaatatggaaacaaaaacagaagcaaaagcaagatgattgttctgaactggtc
ttatatattcatgataatgagctcataaagggcatagtagataaggcccagtttgggaag
tatgggatagttcatacagttcatgaactctatggtgcagatatagctgggatactgctc
tcgacattcagccgcttatttacacttttcttgcagttgcatgggtttacttgtgggata
gatgacctgctactattgcaaaaggcggataaactgagaagtgacattcttagtggaagt
gaaaagtgtagcgaagaagtccacctgaaatttactggagctggagaggatcttaaaggt
gatccggtaaaattgcatatggaggtggagaaggctgtaagaagtaaaggtgaatcggac
acgggtagcttggacaatcttatgaaaagtgctctaagtggaataacaaccgaagtcaat
aaaaacttatttcctgatggtctacaaaagccctttcctggaaattgtctctctcttatg
actacaactggagccaaaggtggcccagttaacatgaatcaaatatcatcattgctaggc
cagcaagagttagaaggaaagcgtgttccacggatggtttctgggaagactttaccatgc
tttccgccatgggatatttcttcaagagctggtggtttcatcagtgatcgatttttaact
ggtctgcgccctcaagagtattactttcactgtatggcaggcagagaggggttggttgac
acagcagtcaaaacatcccgtagtggataccttcagcgttgtcttatgaaatgtttggaa
tcattgaaagtctcctatgatcacacagttcgggatgtcgatggatcaattgtacagttc
cagtatggagaagatggagttgatgtgctgaaaactagctttctcaaggagttcaaagaa
cttgctaataacagaaaagctgtccttgccaagctcggtggccacagtacgaagcccaca
tataatcaatacattacaaaactgcctacaaagttgaatagtgacgcggaagagtttctt
gagcattcaaaggaatttcaacactgtcgatacaacattgaggcagaggaattaaaggag
ttactggaagtcaagtacctctctagtcttgtagatcctggtgaggctgttggtgtggtt
gctgctcagtcaataggagaaccttctacgcagatgacgctcaacacttttcatcttgct
ggaaggggtgacctgaatgtaactcttggtatacctcggttgaaagaaatactgatgact
gcatcagctaatattaagacgcctgttatgaagtgtcctttgcttgaacatacttctatg
gatgatgctaaaatggtggctgcaaagcttatgagggttcgtgtggctgatatagtggag
aaaattgaagtgtgcacagttcctttttacaactgtaatgggcatgtttcaaccctgtac
aagttacagatgaaactctatccagaagaccagcttgagtcaggccttactgtaaatgag
tgtcaggcaaccttgagaacagtttttgttgacgcaatggaacatgcaattgaaaagcat
ctagatctgctacacaaaataaatgaaatccgtgctgttaaggtaaaagatacagatggc
tcattatcagatggtggtgaagaatctgaaagtagacatgctgatggaggagacactgtt
acaagtgatgatgatgatgatcaaaatgataatgatgatgacttgggaactgatgcagaa
aagatgaaacggcaagagaaagatgagatggagtatgatgatgatactgaaaacgaggag
ggaatgggtagcgaatctgaggagagcgatgatgatccagctggcgatgattcacaagag
gctgacaaagaacacaaaatcaagtctgagacgacttcagtggatgacctgtcatattcc
gcaaaaaaggggaaaaaatcaaaagataatcatggaacagctaaactagaagagaaaaat
caaaataagggacggttaggtgaccaaaaacaagatcaaataacgaagcgcaggaaaaag
ttaacacgtactatccatgttgaatccaatgacttggattttgagattcactatgccttt
cttgatgaacctcatattttactagctcagattgccaagaagatagctaggactattttt
gtgaaggcctgcaataacattgatgattgtaagatcgtcaagccaagggacgaccatgcc
cgtatacagacggccggagtgaattttgaagtggtctggaacctcaacgaatacatcagc
gtgcatgacatcacatcaaatgacatccatgcaatactgaagacatatggggtggaggcc
gcacggaataccatcatcaacgaagtgagcggcgtttttaaaccctacggcatcgatgtt
gacatgaggcacctgagcatgatcgcggacttcatgaccttggatggcggataccggcct
atgaacaggatagggatcggccagttcagcacctcgccgtttggcaagatgacgttcgag
acagcaaccaagttcattgtggaggcagcaacacatggggaggcagactttctggagtgc
ccttcagcgagtgtctgccttgggaagcccccgaaggttgggaccgggatctttgggcta
ctgcagaatcttgaattggagcagcccatggaaacctaa
DBGET
integrated database retrieval system
