Sorghum bicolor (sorghum): 8076053
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Entry
8076053 CDS
T01086
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00900
Terpenoid backbone biosynthesis
sbi01100
Metabolic pathways
sbi01110
Biosynthesis of secondary metabolites
Module
sbi_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
8076053
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
sbi01006
]
8076053
Enzymes [BR:
sbi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
8076053
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
8076053
2.5.1.29 geranylgeranyl diphosphate synthase
8076053
Prenyltransferases [BR:
sbi01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
8076053
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
NIT
Motif
Other DBs
NCBI-GeneID:
8076053
NCBI-ProteinID:
XP_002452775
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All DBs
Position
4:62947526..62949015
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AA seq
342 aa
AA seq
DB search
MALSSLFITLPVPKVPSSNSRRLLTARASSAAAPAASASFDLRRYWTSLIADVESELDAA
MPMQPPESIHSAMRYAVLPGAGKEGAAKRAPPVLCVAACELLGGPRAAALPAAAALEMLH
AASLVHDDLPCFDAAPTRRGRPSTHAAYGTDMAVLAGDALFPLAYTHVISHTPSPDPVPH
AVLLRVLAELARAVGSTGMAAGQFLDLAGATALGEAEVMQVLTKKFGEMAECSAACGAML
GGAGPDEEAALRRYGRTIGVLYELVDDVRSASGNGKMRRNASVLRSLGMDRALGIVEELK
AQAKTEADRFGDKYGDRVLPLYSFVDYAVERGFELQGAAATS
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggctctctcctccctcttcatcaccctccccgtccccaaggtcccttcctccaactcc
cgccgcttgctcaccgcccgggcgtcctccgccgccgctcccgccgcctctgcttccttc
gacctgcgccgctactggacctctctgatcgccgatgtggagtccgaactcgacgccgcg
atgcccatgcagcctccggagagcatccactccgccatgcgctacgcggtgctcccgggc
gccggcaaggagggcgccgccaagcgggcgccccccgtgctgtgcgtcgccgcgtgcgag
ctcctcgggggcccgcgcgcggccgcgctcccggccgccgcggcgctggagatgctccac
gcggcgtcgctcgtgcacgacgacctgccctgcttcgacgcagccccgacgcggcgcggg
cgcccgtccacgcacgcggcgtacggcaccgacatggccgtcctcgcgggggacgctctc
ttcccgctcgcctacacccacgtcatctcccacaccccgtccccggacccggtcccgcac
gccgtcctcctgcgcgtcctcgcggagctcgcgcgcgccgtcggatccaccggcatggcg
gccggccagttcctcgatctggccggcgccaccgcccttggcgaggccgaggtcatgcag
gtcctgacgaagaagttcggcgagatggccgagtgctccgccgcctgcggcgccatgctc
ggtggggcagggcccgacgaggaggccgcgctgcggcgctacggccgcaccatcggcgtc
ctgtacgagctcgtcgacgacgtccggagcgcgtcgggcaacggaaagatgaggaggaac
gccagcgtcctgcgctccctggggatggaccgcgcgctgggcattgtggaggagctcaag
gctcaggccaagacagaggctgacaggttcggggacaagtatggcgatcgggtgctgccc
ttgtacagcttcgtggactacgcggtggagagagggtttgagctccagggtgcagcggca
acttcatag
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