Sorghum bicolor (sorghum): 8076592
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Entry
8076592 CDS
T01086
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03020
RNA polymerase
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8076592
09124 Replication and repair
03420 Nucleotide excision repair
8076592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8076592
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8076592
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8076592
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8076592
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8076592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
8076592
NCBI-ProteinID:
XP_002443877
UniProt:
C5YGY9
LinkDB
All DBs
Position
7:4452818..4462273
Genome browser
AA seq
1857 aa
AA seq
DB search
MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPVKKRGGCGAQQPNITVD
GMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYARP
DWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITE
FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART
VITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRE
DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF
RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL
LGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINL
IRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAAR
KFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLE
AEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA
CVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG
LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKL
DSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQL
GTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPG
DDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGE
MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP
EVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDID
PDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRITN
DEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKAA
NEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHL
RGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPY
HEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFTP
EKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
PTSPSYSPTSPSYNPSSAKYSPSHAYSPSSPRMTPYSQTSPSYSPTSPTYSPTSPSYSQP
SPSYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQGNDKDDESNR
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtcgagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcggtggttcaaatagaacatgcagag
accatggagaggggaaaaccgaagcctggtgggctcagtgaccctcgattggggactatc
gaccggaaaattaagtgcgagacatgcatggcagggatggcagagtgcccaggccacttt
gggcaccttgagcttgccaagccgatgttccacatcggattcattaagactgtgctctcc
atcatgcgctgtgtttgctttaactgctccaagatccttgcggatgaggatgaaaccaaa
tttaagcaggctctaaaaatcaggaatccaaagaatagattgaagagaatatatgatgct
tgcaagagcaaaaaagtctgtgcaggtggcgatgaccttgatgttcaggagcaggatact
gacgagcctgttaagaaaagaggtggctgtggtgctcagcagccaaatattacagtagat
ggtatgaagatggtcgcagagtttaaagctccaaagaagaaaagtgatgatcaggatcaa
ctccctgagccagtggaacgcaagcaaatcctttcagctgagagggtccttaatgttcta
aagcgtataagcgatgaggactgtcttctgttgggcctgaatcccaaatatgcccgtcct
gattggatgatacttcaagttcttccagtccctccaccccctgttagaccatctgtcatg
atggacacttcttccagaagtgaggatgatttgactcatcagttagctatgataatacgg
cataatgagaacttgaggaggcaagagagaaatggtgctccagctcacattataacagag
tttgctcagttgttgcaatttcatattgcaacatactttgataatgaacttcctggccaa
cccagggccacgcagcgttctggaaggcctattaaatcaatttgcagcaggctgaaagct
aaagaaggccgaattagaggaaacttgatgggcaagcgtgttgatttctcggcacgtact
gttattacaccagatccaaacataaacattgatgagttgggagtaccatggagcattgct
ttgaacctgacatatcctgaaactgtcactccatataatattgagaggttgaaggaactt
gttgaatatgggcctcaccctcccccagggaagaccggtgcaaagtacattatcagggaa
gatggtcagaggcttgatcttcgatatgtgaagaaaagcagcgatcagcatctggagctt
ggttacaaggtggaaagacatctcaatgatggggattttgttcttttcaatcggcaacca
agtcttcataaaatgtctatcatggggcatcgcatcaaaattatgccctactcaactttc
cggttgaacttgtctgtcacttcaccatacaatgctgactttgatggtgatgagatgaat
atgcatgtgccccagtcatttgagaccagggcagaagttctggagttaatgatggtgcca
aaatgcattgtctctccacaatcaaataggcctgtcatgggtattgtccaagacacactg
cttggttgtcgcaaaattactaaaagggacactctaattgaaaaggatgtatttatgaac
atcttgatgtggtggcaagactttgatggaaagattcctgcacctgccattttgaaacct
aggcctatttggactgggaaacaagtttttaacttaattatccccaagcaaataaattta
atacggttttcagcatggcattcggaagaagaaaagggatttattactcctggtgatact
atggtcaggatagagaagggagagcttctgtctggtacactttgcaagaagagtcttgga
acaggcactggaagtcttatccatatcatttgggaagaggttggtcctgatgctgcccgg
aagttcttaggacatacacagtggcttgtaaactactggcttcttcaaaatggtttcagt
attggaattggggataccattgcagatgcttccaccatgcaaacgattaatgacacaatt
tgtaaagcaaaggatgaggtgaaggagcttattaaaaaagcacatgagaagcagttggaa
gctgagccaggacgcaccatgatggagtcatttgaaaacagagtgaaccaggttcttaac
aaagctcgtgatgatgctgggagcagtgctcagaagagcttgtctgaaagcaacaatttg
aaggctatggtcactgcaggctcaaaaggaagtttcattaacatttcacaaatgactgct
tgtgtgggacagcagaatgttgagggcaagcggatcccttttggtttcattgatcggacg
ttgccacatttcacaaaagatgattatggtcctgaaagtcgtggatttgtggaaaattct
tacctccgaggtctgacaccacaagaatttttctttcacgctatgggtggtagagaaggt
cttatagatactgctgtgaagacctctgagacagggtatatccagaggagacttgtgaaa
gctatggaggacatcatggttaaatacgatggtactgtaagaaattctctgggagatgtc
attcagttcttgtatggggaagatggcatggatgctgtttggattgaatctcaaaaattg
gactcattgaagatgaagaagcctgagtttgataatttgttccgttatgagctggatgac
gagaactggagacctaactacatgctaccagaacatgttgacgatttgaagaccatacgt
gaatttagaaatgtgtttgaggcagaggttcaaaagctagaagctgatcggtaccagctt
gggactgagattgccacaactggtgacaattcatggcctatgcctgtgaatctcaagcgg
ctcatctggaatgctcagaagacattcaggattgattttagaagaccttctgacatgcac
cctatggaaattgtagaagcggtagataaactgcaagaaagacttaaggttgtacctggt
gatgatcccatgagcattgaggctcagaagaatgcaaccttgttctttaatatcctgctt
cgtagcacgtttgctagcaagagggtcttgaaggaatacaggcttacaaaggaagctttt
gaatgggttatcggtgagattgaatcgaggtttcttcagtctttggtggcccctggtgag
atgattggatgtgtggctgcacaatcaattggagaaccagcaacacagatgaccctaaat
accttccattatgctggtgtcagtgccaagaatgtcacccttggagttcccaggttgagg
gagatcattaatgttgccaagaagataaagactccatctttgtctgtttacctgaagcct
gaggtgaaccagaagaaagaattggctaagaatgtccagtgtgctttggagtacaccaca
ctgcgtagtgttacccacgccacagagatatggtatgatcctgatccgctaggaaccatc
atcgaagaggatgcagagtttgttcagtcctattacgaaatgcctgatgaggatattgac
ccggataaaatttctccttggctgctgcgtattgagcttaatcgtgagatgatggttgat
aagaagttgagcatggctgatattgccgacaagattaaccgtgagtttgatgatgactta
tcatgcattttcaatgatgataatgcggataagctcatcctccgtatccgcatcacaaat
gatgaagctccaaaaggagaaatacaagatgagtctgctgaggatgatgtcttcctaaaa
aagatagagggtaatatgttgacagagatggcgcttcgaggcattccagatatcaacaaa
gtgttcatcaaagaagggaaggtcaatactttttatcaagacgaaggtttcaaagcagcc
aatgaatggatgctcgatacagaaggtgtgaatctcttagctgtcatgtgtcatgaggat
gttgatgctacaaggacaacaagtaaccatctgattgaagtgattgaggtacttggaatt
gaggctgtccgtcgatctctcttggatgagcttcgggtggtgatatctttcgatggatcc
tatgtgaactacaggcatctggccattctttgtgatacaatgacatacagaggtcaccta
atggcgattacaaggcatggtatcaaccgcaatgacactgggcctcttatgagatgttcc
tttgaagagactgttgacatcttacttgatgctgctgtatatgctgaatctgaccacctg
agaggtgtcactgaaaacataatgcttggtcagcttgctcctattggtactggaggctgt
gcgctatatctgaatgaccagatgttgcagcaggcaattgaacttcaacttccaagctat
gtggaaggcctggacttcggcatgacaccagcacgatcacccatctctgggacaccttac
catgaaggaatgatgtccccaagttatctgctgagtccaaacatcagggcttcccccatt
aatacagatgcttcgttctcaccatatgttgggcacatggcattctcaccattcccttca
ccaggtggttactctccatcgtcagggggatacagtccatcttctcctgttttcacccca
gagaaaggatatagccctctttctccatcatacagccctgcatcgccaagctatagtccc
acctcaccatcatatacacctggctctcccacctacagtcccacaagcccgaattactcc
ccaacaagtccgacttactcgcctaccagtccatcatactcacccacatctccgagttac
agcccaacatctcctagctacagtcctacatcaccaagctacagccctacatctcctagt
tatagtcctacatcaccaagttacagccccacctcaccagtttatagccctacatctcca
gcatacagccctacatctcccgcatatagccccacatcaccatcttacagtccaacttcg
ccatcttatagccctacatcaccatcatacagcccaacatccccctcatacagccctacc
tccccctcatacagccctacctccccctcatacagccctacctccccctcgtacagccca
acatcacctgcatacagccctacttcgccaggatacagcccaacatcaccgagctacagt
cctacttctccgagctacagtcctacttctccgagctacaatccttcatcagccaagtac
agcccttcgcatgcatactctccaagcagcccccggatgactccatatagtcagacttct
ccaagctacagtccaacgtcaccgacatactctccaacgtcaccatcatattcacaacca
agtccatcgtacagcccaacaagcccgttcaacacctctggaggacctagcccagattat
agcccaacctctccaaattacagccctagtggaagctactcccccactgcaccggggtac
tccccatcgtccacaggccaaggtaatgacaaggatgacgagagcaatcgttga
DBGET
integrated database retrieval system
