Sphingomonas cannabina: LZK98_11215
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Entry
LZK98_11215 CDS
T08607
Name
(GenBank) RNA degradosome polyphosphate kinase
KO
K00937
polyphosphate kinase [EC:
2.7.4.1
]
Organism
scab
Sphingomonas cannabina
Pathway
scab00190
Oxidative phosphorylation
scab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09100 Metabolism
09102 Energy metabolism
00190 Oxidative phosphorylation
LZK98_11215
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZK98_11215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scab03019
]
LZK98_11215
Enzymes [BR:
scab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.1 ATP-polyphosphate phosphotransferase
LZK98_11215
Messenger RNA biogenesis [BR:
scab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LZK98_11215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PP_kinase_C_1
PP_kinase_C
PP_kinase
PP_kinase_N
PLDc_2
MIC5
Motif
Other DBs
NCBI-ProteinID:
UIJ43660
LinkDB
All DBs
Position
2379271..2381463
Genome browser
AA seq
730 aa
AA seq
DB search
MTHAAATIHEIEDSLAGDGSRYFNRELSWLAFNRRVLEEATNPAHPLLERLRFLSISGSN
LDEFFMVRVAGLKGQQLQNVEQRSPDGLTPGQQLAAIVAEADALVDSQQAVWRDLQRELE
EAGIDVLDAEEIDGKTGEWLEAHFREQVFPILTPQALDPAHPFPFIPNKGSSVVFDLVRL
SDGEPIRELVLLPASTPRFVRLPGERACYVTVETLLKRFSDQLFPGYEVKGAASFRILRD
SDIELEEEAEDLVLYFRSAIKRRRRGRVIRLEMETGVSAELESVLKDELGGSDAILTETG
GFLGIGDLAMLVDEDRPELKFPPFSPRFPERIREYGGDCFAAIKAKDIVVHHPYETFDVV
LSFLRQAASDPDVVAIKQTLYRAGKQSAVINALIAAAEAGKSVTAVVELKARFDEEQNLL
WASALERAGVQVVYGFIDWKTHAKISMVVRREGGGFRTYCHFGTGNYHPITARIYTDLSF
FTADARIGRDAAAIFNYVTGYVEPTHLELLANSPRDLRNRLVELIDGEIANAHVGKPAAI
WAKMNSVVDPAVIEKLYEASNAGVEIDLVVRGICCLKPGVPGMSENIRVKSVVGRFLEHS
RIWAFGNGKALPNDGAKLFISSADWMPRNFDRRVEFMLPILNPTVHDQILDQVMVANLID
NEQSWELQPDGRYIRVHHGHSRPFNLHRYFMTNPSLSGRGAALDSDAVPKLSLRRRRTHP
ERAPEPVAGA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtgactcacgccgccgccaccattcacgagatcgaggacagtcttgccggcgacggcagc
cggtacttcaaccgcgagctgtcctggctcgccttcaaccgccgcgtgctcgaggaggcg
accaatccggcacatccgctgctggagcggctgcgcttcctgtcgatctcgggctcgaac
ctcgacgagttcttcatggttcgcgtcgccggcctcaagggccagcagctccagaacgtc
gagcagcgctcgcccgacggcctcacccctggccagcagctcgccgcgatcgttgccgag
gcggatgcgctggtcgacagccagcaggcggtgtggcgtgacctacagcgcgagctcgaa
gaggccggcatcgacgtgctcgatgccgaggagatcgacggcaagaccggcgaatggctg
gaggcgcatttccgcgagcaggtgttcccgatcctgactccgcaggcgctcgatccggca
cacccgttcccgttcatccccaacaaggggtcgagcgtggtgttcgaccttgtccgcctg
tcggacggcgaaccgatccgcgagctggtgctgctgccggcgagcacgccgcgcttcgtg
cgcctgcccggcgagcgggcctgctacgtgactgtagaaacactgctcaagcgtttctct
gatcaactttttccaggctatgaagtcaaaggcgccgcgtcattccgcatcctgcgcgac
agcgacatcgagctggaggaggaggccgaggacctcgtcctctacttccgtagcgccatc
aagcgccgccgccgtggccgcgtgatccggctcgagatggagacgggagtcagcgcggag
ctggaaagcgtgctcaaggacgagctcggcggcagcgacgcgatcctgaccgaaaccggt
ggcttcctgggcatcggcgatctcgcgatgctggtcgacgaggaccggcccgaactcaag
tttccgccgttcagcccgcgcttccctgagcgcatccgcgaatatggcggcgactgcttc
gcggcgatcaaggccaaggatattgtcgtccaccacccgtacgagaccttcgacgtggtg
ctgtccttcctgcgccaggcggcgtcggacccggacgtggtggcgatcaagcagacgctc
taccgggccggcaagcagtccgctgtcatcaacgcgctgatcgcggcggccgaggcgggc
aagtcggtaacggccgtggtcgagctgaaggcgcgcttcgacgaggagcagaacctgctc
tgggcctcggcgctggagcgagccggcgtgcaggtcgtctacggcttcatcgattggaag
acgcacgccaagatctcgatggtcgtgcggagggaaggcgggggcttccggacctactgc
cacttcggcaccggcaactatcatccgatcaccgcgcgaatctacacggatctcagcttc
ttcaccgccgatgctcgcatcggacgcgatgctgctgcaatcttcaactacgtcaccggt
tacgtcgagccgacgcatctggagttgctcgccaactcgccgcgcgacctgcgcaaccgg
ctggtggagctgatcgacggcgagatcgccaatgcccatgtcggcaagcccgccgcgatc
tgggcgaagatgaactcggtggtcgatcccgcggtgatcgagaagctctacgaagcgtcg
aatgccggggtcgagatcgacctggtggtgcgtggcatctgctgcctcaagccgggcgtg
ccaggcatgtccgagaacatccgcgtcaagtcggtggtcggccgcttcctcgagcacagc
cgcatctgggcgtttggcaacggcaaggcgctgccgaacgatggggcgaagctgttcatt
tcctctgcggactggatgccgcgcaacttcgaccgccgggtcgagttcatgctgccgatc
ctcaacccgacggtgcacgaccagatcctcgaccaggtgatggtcgccaacctgatcgac
aacgagcagagctgggagctccagcccgatggccgctatatccgcgtccatcatggtcac
agccggccgttcaacctccaccgctatttcatgaccaatccctcgctttcgggccgtggc
gcggcgctcgattcggatgccgtgcccaaattgtcgctgcgccgccgccggacgcacccc
gagcgcgcgccggagccggtggccggcgcctga
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