Gracilinema caldarium: Spica_0462
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Entry
Spica_0462 CDS
T01573
Name
(GenBank) Ribosomal protein S12 methylthiotransferase rimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
scd
Gracilinema caldarium
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scd03009
]
Spica_0462
Enzymes [BR:
scd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Spica_0462
Ribosome biogenesis [BR:
scd03009
]
Prokaryotic type
ribosomal protein modification factors
Spica_0462
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
AEJ18626
UniProt:
F8EYP9
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All DBs
Position
517209..518573
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AA seq
454 aa
AA seq
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MNKRFYLDPHGCAKNQVDGEILMSVLAQSGWEACAEAEDADLVIVNSCGFIESAKRESIE
AVLSYKQLYPQKRVLLAGCLAQRYADELAAELQEADALFGNTDLSRIAEAAEQAMSSSHK
ALVPPLDNTGKTDFARCSDDRPLLSLPGSAYVKITEGCDNRCTYCAIPLIRGNLRSRSID
SVVAECSGLLKRGVKELCLIGQDLGSYGKDGAAGAFAAGQCRLAELLSAISALPGDFWVR
LLYIHPDHFPFEILPICKRDSRILPYFDLPFQHASERILRLMNRRGNAEAYLNLLTTIQK
ELPDATIRSTFLVGFPGETDEDMQILLDFQQRAQLDWLGVFTYSREEDTPAYSMKGRVPK
KVAEGRKRQIEAAQIPITESRMDRFVGRTLPVLIEERVENEDGLYLGRTLCQAPEVDGST
VLSADQNLTPGTFVSARVFSRAGFDLDAAFRTMG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacgcttttatcttgatccccatggttgtgctaaaaaccaggtcgatggagaa
atcctcatgtcagtgctggcacagtctggttgggaggcctgtgccgaggcagaggatgca
gatctggttatagtcaattcctgtggttttatcgaaagtgcaaaacgggaatctatagag
gcggtactttcctataaacagctctatccgcaaaaacgggtgttgttagccggctgtctt
gcccagcgctatgccgatgagcttgcggcggaattacaggaagcggatgccctttttgga
aacaccgatttatcccgtattgcggaagccgcagaacaggccatgtcaagttcccataag
gcgctggtgccgcctttggataatacaggaaaaactgactttgcccgttgttccgatgac
cggcccctgctttcgcttccaggttctgcctatgtgaaaattactgagggctgtgacaac
cgctgtacctattgtgccatccctctcatccggggcaatcttcgcagccggagcatagat
tctgtcgttgctgaatgttcaggcctcctcaagcggggagtgaaagaactctgcctgatt
ggtcaggacctgggctcttatggcaaagacggtgccgccggagcatttgcagcaggccag
tgcagattggcggaattgctttccgctatttctgcgcttcccggtgatttctgggtgcgg
cttctctacatccatcctgatcatttcccctttgaaatcctgcccatctgcaaaagagat
tcccgtattctgccctactttgatctcccctttcagcatgcgtcagagcgaatcctcagg
ttgatgaatcggcgaggcaatgctgaagcctacctaaatttacttactaccatccagaag
gaactgcccgatgcgaccattcgttccacctttctggttggttttcccggagaaaccgac
gaagatatgcagatcctcctggattttcaacagagagcgcaattggattggcttggggtc
tttacctattcccgtgaagaggatactcctgcctattccatgaagggccgggtaccaaaa
aaagttgctgaaggccggaaacgacagattgaagctgcccaaatccctataactgaatcc
cgcatggatcgctttgttggcagaaccttaccagttctcatagaagagcgggtcgaaaat
gaagatggcctgtatctgggccgtaccctttgtcaggcccctgaggtagatggatctacc
gtacttagtgcggaccagaatcttaccccaggaacttttgtatctgccagagtgttttcc
cgggcaggctttgacctagatgcggcctttcgcaccatgggttga
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