Siniperca chuatsi (mandarin fish): 122863526
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Entry
122863526 CDS
T08948
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu00100
Steroid biosynthesis
schu01100
Metabolic pathways
Module
schu_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
122863526 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
schu01006
]
122863526 (fdft1)
Enzymes [BR:
schu01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
122863526 (fdft1)
Prenyltransferases [BR:
schu01006
]
Terpene biosynthesis
Squalene/phytoene synthase
122863526 (fdft1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
122863526
NCBI-ProteinID:
XP_044026038
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All DBs
Position
LG16:14998194..15007213
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AA seq
457 aa
AA seq
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MAGACCKCPVSLSVFKRSLSVAQRGCGSAPRSLLLGWRLGERGLQEAARPSSALRPACSY
RHTAFVCLSCQESMSESRRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMSIPLDKKVPMLIDFHTYLYQDEWRFTQSQQKDRQVLEDFPTISLEFRNLAQEYRDI
ISDICHRIGVGMAEFLEKKVGSMKEWDLYCHIVAGLVGIGLSQLFSVSKLEDPEVGRDTE
LANSMGLFLQKTNIIRDYLEDIQEGRAFWPQEAWSQFAGRLEDFAQPQNLDSALSCLNML
VTDALRHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLSTFYNNPMVFQGVVKIRKGQTV
TLMMEATNMRAVQTIIAQYSQEILQKVSLTDPSRDKTLHILALIREKSALSESSLTSRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQSQGTSDMQGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccagtctccctgtccgtgttcaagcgctctctctcg
gtggcgcagcggggctgcgggtccgctcctcggtccctccttctgggctggaggctgggg
gagcggggcctgcaggaggccgcccgaccctccagcgccctcagacccgcatgctcttac
cgacacactgccttcgtctgtctctcctgccaggagtccatgagtgagagtcgtcggacc
tgctacctgtacctgaaccaaaccagccggagttttgcagctgtgattcaggcgctggac
ggggagttaagacacgcagtttgtattttctacctggtgctgcgagcgctggacacagtg
gaggacgacatgagcatccctctggacaagaaggttcccatgctgatcgatttccacacc
tacctgtaccaggatgagtggcgcttcactcagagccagcagaaagaccgacaggttctg
gaggatttccccacgatatcgctggaattcagaaacctcgctcaggaatacagagacatt
atctcggatatctgccaccgtatcggagtcgggatggctgaattcctggaaaagaaagtg
ggatccatgaaggagtgggacctgtattgccacattgtggcagggctggtcggtatcggt
ctgtctcagctgttctctgtgtccaagctggaggatcccgaggtggggcgggacaccgag
ctggccaactccatgggcctgttcctccagaagactaacatcatccgagactatctcgag
gacatacaagagggacgtgccttctggccacaagaggcttggagtcagtttgcaggtcgt
ctggaggactttgcccagcctcagaacctggactcggctctgtcctgtctcaacatgctg
gtcactgatgctctgcgtcacatcccggatgttatcacctacctgtcccgcctgcgcaac
cagagcatcttcaatttctgtgccattccacaggtgatggcaatagctacactatctaca
ttctacaacaatcccatggtgttccagggagtggtgaagatcagaaagggacagactgtc
acactcatgatggaagccaccaacatgagagctgtgcagaccatcattgcccagtacagc
caggagattttacagaaggtctccctcactgacccgtcacgggacaagaccctgcacatc
ctggctctaatccgagagaagtccgccctgtcagagtccagcctcacctccaggacccac
cacctgtcgcccatgtacctgtccgctgccatgctgctcgccgccctcagctggcagtac
ctcagcaccactgcagcacagtcacagggcaccagcgacatgcagggacaatga
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