Siniperca chuatsi (mandarin fish): 122867155
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Entry
122867155 CDS
T08948
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu00310
Lysine degradation
schu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
122867155 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122867155 (prdm9)
03036 Chromosome and associated proteins [BR:
schu03036
]
122867155 (prdm9)
Enzymes [BR:
schu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
122867155 (prdm9)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
122867155 (prdm9)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
122867155 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
122867155 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
PRDM2_PR
zf-H2C2_2
zf-C2H2_jaz
SET
zf-C2H2_3rep
zf-met
Zn-ribbon_8
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
122867155
NCBI-ProteinID:
XP_044033482
LinkDB
All DBs
Position
LG20:complement(6234533..6240592)
Genome browser
AA seq
946 aa
AA seq
DB search
MSGRGNGVEWVETTEEVVVTEECLPPEHNTPAVIPVLEPAETPIQRLLDTVGHGDNPEGD
GGFYCEECLTLFQDQSDPANINGPSFVLDFPTSMGVPQRALLTLPYGLMIGRSSIPNAGV
GVINHGPIVSPGMHFGPYEGEVTTRENAMASDFSWEIYKGKEEYEYIDAARESHSNWMRY
VNCARNKDETNLLAVQYKGSILFHCCRTIHPGDELMVWPSSKLLTHFSEAWTQVWLMKLN
ATETNTTATSQIFLCSHCPLSFTTEAFLQRHTEYFHIQPKGDCSTPAAEAVEPENPTSSA
DSGHSAASLVVLSVDPVTSNTCGDCGKIFKQIPHLRRHKLCVHSNKRPYCCPQCRRSFSQ
ASGLIRHQLVHRKPAVIKEAYIVPNQNKILSEKNESLTQRSELFNTADPAVAQETKEMNE
SENLQGAMDVMETENTSAGEAETSQSNCSDCGKNFTNDASLKKHKVTVHERLRPYVCTVC
QKCFGQYNDLTRHLLRHQKQSKSGENLNQAPEECTTMPFSCAECLVAFSSVDTLQQHISE
HHSEETTVENQEDDPVPAGDDQSHDPDFIPQSSVAETVESIQKRPSQRPQRLGARSKISA
ITKLIAPKRRVAICKKPLAIPAQTERSSTEPPAARNGKLTKYKWFSCNRCKRTYGNPDDL
KAHKCTLRQHKCGQCGATFNKFGFLKRHEQMVHVKAKSYSCERCGKVLTTSGNLKQHQKS
KTCMKYHCTSELFPCSFCQFSFTMKSYLIKHIKRHHPVEFLSHCDSDSLMDQLEEEEGEK
ECICPHCGKRCASAKAFKSHTCFQQVKVLYLCTDCGKGFSNHYGLKQHQRIHTGEKPYNC
PHCSKSFSYTGQLNVHLRTHTGEKPYLCTHCGESFRQSGDLKRHERKHTGVRPYSCPECC
KSFSRPQSLKAHQMLHLGQRMFKCTQCGKSFSRNYHLRRHHQKMHL
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcaggggcaacggtgtggagtgggttgagacaaccgaggaggttgttgtaaca
gaggagtgtctaccccctgaacacaacactcctgcagtgataccggttttggagccagca
gaaacgccaatccagaggttactggacactgtggggcatggagataacccagagggtgat
ggtggcttctattgtgaggagtgtctgactctcttccaggaccagagtgatcccgctaac
attaatggcccatcttttgttcttgactttccaacgagcatgggcgtcccccagagggcc
ctcctcactcttccctatggcctgatgattggcagatctagcattcccaatgcaggcgtt
ggagtcataaatcacggaccaatcgtgtctccaggaatgcattttggaccatatgagggg
gaagtgacaacaagagaaaatgccatggcaagtgacttctcctgggagatttacaaagga
aaagaggagtatgagtatattgatgctgccagagaatcacactcaaactggatgaggtac
gtcaattgtgctcgtaataaagacgagacgaatttgctggcagtccagtacaaaggtagc
atcctttttcattgctgccgcaccatacaccctggagatgagctcatggtgtggcccagc
agcaaacttctcacccattttagtgaagcttggacccaggtgtggttgatgaagttgaat
gcaacagagactaatacaactgcgacatctcagatcttcctgtgttcccactgtccgctg
tccttcactacagaggccttcctccagcgacatacagaatacttccacatacagcctaaa
ggggactgttcaacaccagccgctgaggcagttgaacctgaaaatcccacttccagtgct
gactcaggtcactctgcagcatctctggtggtattatctgttgatcctgtcacatccaat
acatgtggtgattgcgggaagattttcaagcaaatacctcacctcaggaggcacaagctt
tgcgtccactcaaacaaacgtccctactgctgcccacagtgcaggcggagttttagccag
gcatctggcttaatcagacaccagctagttcacagaaagccggctgtgataaaagaggca
tacattgttcctaatcagaacaaaattcttagtgagaagaacgagagcttgacacagagg
tctgaactttttaacactgcggatccagctgtagcacaggaaacaaaggaaatgaatgaa
agtgagaatctacaaggagctatggatgtaatggaaacggagaatacttctgcaggagag
gcagaaacatcccaatccaattgttcagactgtggtaagaacttcacaaatgatgcatcc
ctcaaaaaacacaaggtgactgtccatgaaaggttacgtccatacgtctgcactgtgtgt
cagaagtgctttggccagtacaacgacctgaccaggcaccttctgcgtcaccaaaagcaa
agcaaaagtggagaaaatcttaatcaggctccagaggaatgcaccaccatgccctttagc
tgtgctgagtgtttagtggctttttcttcagtagacacccttcagcagcacataagtgag
catcactcagaggagaccacagtggaaaatcaagaggatgatccagtgccagctggtgat
gatcagagccatgatccagacttcattccacaatcctcagtggctgaaacagttgaatct
atccaaaaacgtccctctcagaggcctcagcgacttggagctagatctaaaatttctgcc
ataaccaagctcatagctccaaaacgaagggtggccatctgcaagaaaccattagccatc
cctgctcagactgagaggagctccactgaaccacctgctgccagaaatggaaagttaaca
aaatacaaatggtttagctgtaatcgttgcaaacgaacatacggaaacccagatgatctc
aaagcacataagtgcactttaagacagcacaagtgcggtcagtgtggggcgacctttaat
aagtttggcttcctgaaaagacacgagcagatggtacatgtgaaggcaaaatcttacagc
tgtgaacgctgtggtaaagtcttaactacatctggtaaccttaaacagcatcagaagagc
aagacttgtatgaagtatcactgcacgtctgagcttttcccatgttcattttgtcagttc
tccttcactatgaagagctaccttattaaacacatcaagaggcaccaccctgtggagttt
ctgtcccactgcgattcggacagcctcatggatcagctggaggaagaggagggggaaaaa
gaatgtatatgccctcattgcgggaagaggtgtgcaagcgccaaagctttcaaatctcac
acgtgcttccagcaggtgaaggtactgtacttgtgcactgactgtggaaagggcttctca
aaccactacggtctcaagcaacatcagcgcattcacacaggcgagaagccttacaactgc
cctcactgcagcaaaagcttctcttacaccggccaactcaacgtgcatctcaggactcac
accggggagaagccgtacctgtgcacccactgtggggagagctttcggcagtcgggagac
ctgaaacgacatgagaggaagcacacgggagtgaggccctacagctgccccgaatgttgc
aaaagcttcagccgcccgcagagtctcaaagctcaccaaatgcttcacctgggacagagg
atgttcaaatgcacccagtgcgggaagagcttttcccgaaactatcacctcaggagacac
catcagaagatgcatttgtag
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