Siniperca chuatsi (mandarin fish): 122869909
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Entry
122869909 CDS
T08948
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03020
RNA polymerase
schu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122869909 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
122869909 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122869909 (polr2a)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122869909 (polr2a)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122869909 (polr2a)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122869909 (polr2a)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122869909 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
122869909
NCBI-ProteinID:
XP_044039247
LinkDB
All DBs
Position
LG22:complement(12935653..12949942)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
SRPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAHVQSALEREFEKMKED
RDVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVDGVHELSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTXPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTXPNYTPTSPNYXPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggttacagaagggggaataaaa
taccccgaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaaggcaa
ggggtcatagaacggactggaagatgtcagacatgtgcaggcaacatgacagaatgccct
ggccactttgggcacatagaactggcaaagccagttttccatgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtctgcttcttctgctctaagctattagtggattcgaac
aatccaaagatcaaagacatcctgataaaatctaaagggcaacccaggaagcgtttgaca
cacgtgtatgagctgtgcaaagggaaaaatatctgtgagggaggggaggagatggacaac
aaattcggaatggaacagcaggagactgaggaggacattaccaaggagaagggccacggt
ggctgtgggcgctaccagccacgcatcagacgttctggcttggagctgtatgccgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcctgctgagtcccgagcgtgtgcac
gagatcttcaagcgcatctctgatgaagaggacgtcatcttgggcatggaccccaagttt
tcccgaccagaatggatgattgtaactgtactgcctgtgcccccactgtctgtcaggcct
gctgtagtcatgcagggctctgctcgcaaccaggatgacttgacacacaagctggctgac
attgtcaaaatcaacaaccagctgagaagaaatgagcaaagtggtgcagcagctcacgtc
atagctgaggatgtcaaactgcttcagtttcatgtagccaccatggtggacaatgaattg
ccaggcctgccaagggcaatgcaaaagtctggccgccctctcaaatccataaaacagcgt
ctaaaggggaaggaggggcgagtccgaggtaacctgatgggcaagcgtgtggacttctcc
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccatcgcagccaatatgaccttcccagaaattgtcacaccctttaatattgacagatta
caagagctggtacgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaattgacctgcgattccaccccaaaccaagtgaccttcatctgcagatt
ggctacaaggtggaaagacacatgtgtgacggtgacatcgtcatcttcaaccgacaacct
acactacataaaatgtctatgatggggcacagggtccggattcttccgtggtccacattt
cgacttaatctcagtgtcaccaccccatacaacgctgactttgacggggatgagatgaac
ctccacctgccccagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcctgtcatgggtatcgtgcaggacaccctc
acagctgtccgcaaattcaccaaaagagacgtcttcttagagagaggcgaagtgatgaac
ctcctcatgttcctctccacttgggatgggaaagtgcctcagccagccatactcaagccc
cgtcctctgtggacaggcaagcagatcttcagcctaatcattcctggacacattaatgtg
atccgcacacacagcacccatcctgacgatgaagacagtggcccttacaaacacatctca
cctggggacaccaaggtcatagtggagaacggtgagttgatcatgggcatcctgtgtaag
aaatctctgggaacctcagccggctcccttgtccacatctcctacctggagatgggccac
gacatcacccggctcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacttaccttgacatt
cagaataccatcaagaaagccaaacaggatgtgatagaagtcattgagaaagcccacaac
aacgagctggagccgacccctggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacaggctcctcagcccagaagtctctgtcggag
tacaacaacttcaagtccatggtggtggctggttctaagggctcaaagattaacatctca
caggttattgctgtggtggggcagcagaacgtggagggtaaacgaatccccttcggcttc
aaacatcgcacgctgcctcacttcattaaggatgattacggtcctgagagcagaggcttt
gtggagaactcctacctggctggcctgacaccaacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtctgtgatggtgaagtacgatggcacagtgcgtaactcc
atcaaccaggtggttcagctgcgttacggtgaggacggcctggcaggagagaacgtcgag
ttccaaaacgtggcaacactcaaaccctcacacaaggcctttgaaaagaaatttaagttt
gattgcaccaacgagcgagcgctgaggcggatgctgcaggaagatgtagtaaaagacgtg
ctgaccaatgcccatgtgcagagtgccttagagagggagtttgagaagatgaaggaggac
agggatgtcctccgagccattttccccactggggacagtaaggtggtgctgccctgcaac
ctggccaggatgatctggaacgcccaaaaaatcttccgcatcaacactcgaaccccaaca
gacctcaatcctctaagggtggtcgatggtgttcatgagctgagtaagaagctggtgatt
gtgaatggtgacgacccgctaagcagacaggcccagcagaacgcaactctgctcttcaac
atccacctgcgctccacactctgctccaaacgcatgacggaggagttccgcctatccact
gaggcttttgactggttgctgggagagattgagaccaaattcaaccagtccattgcccac
ccaggtgaaatggttggcgctctggctgctcagtcgctgggagagccagccacccagatg
accctaaacactttccactacgccggcgtgtcagccaagaatgtaacacttggtgtgcct
cgtctaaaggagttgatcaacatctccaagaggcccaaaacaccctcgctgactgttttc
ctgctgggtcaggcggcacgcgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacactgcgaaaggtgacggccaacactgccatctactacgacccgaacccccag
aacacggtggtagccgaggaccaggagtgggtgaacgtctactacgagatgcctgacttt
gacgtgacacgcatttcaccatggctgctgcgcatcgagctcgaccgcaagcacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaacgcaggttttggagatgac
ttgaactgtattttcaatgacgacaatgcagagaagctcgttctgcgaatcagaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaaaatggatgatgat
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacagggcattgag
cagatcagcaaggtgtacatgcacttgccccagacggacaataagaagaagatcatcatc
acagaggatggtgagttcaaggccttgcaggagtggatccttgagacagacggagtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaatgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagggagttg
taccacgtcatctcctttgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacgtgccgcggtcacctgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccactcatgaagtgttcctttgaggagacggtggatgtgttgatggaggca
tcctctcacggtgagagtgatcccatgaagggtgtgtcggagaacatcatgctcggccag
ctcgccccggctgggacaggatgctttgacctgctgttggatgctgagaagtgtaaatat
ggcatggagatccctacaaacatacctggcatcagcgtggctggaccgactggcatgttc
tttggcactgtgccgagtcccatgagtggtatgtcacccgccatgaccccgtggaacaca
ggagcaacaccggcgtacggtgcctggtcccccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagtgcagcatcagacgcaagtggcttctctccaggctactcc
ccggcctggtctcccactcctgggtctccaggatcaccaggacctgccagcccatacatc
ccatctccaggtggagccatgtcacccaactactcacccacctccccggcctacgagccc
cgctcccccggaggctacaccccacagagccccggctactccccaacatcgccctcctac
tctcccacttctccctcttactcccccaccagtcccaactatagcccgacatctccttcc
tactcacccacttcgcccagttactccccaacctccccgtcctattcgcccacgtctcca
tcttattccccaacttctccctcctactcccctacctccccgtcctattcccccacgtcc
ccctcctactctcccacctcaccgagctacagcccgacgtcgccgagctacagcccaacg
tcacccagttactcgcccacctcaccttcttattcacccaccntcccctcttattctccc
acgtctccatcatactcccccacctccccatcctactcccccacctctccttcctactcg
ccgaccagcccaagctacagccccacatcgccaaactacacgcccacctcacccagttac
tctcccacctctccctcctactcccctacgtcgccctcttactccccgaccntccccaac
tacaccccgaccagccccaactacntccccacctctccctcgtactcccccacctctccg
tcctactcgccctccagtccacgttacaccccgcagtcgcccacctacacacccagctcc
ccctcgtacagccccagctccccctcctactcccccacctcccccaaatataccccaact
tcaccctcatacagccccagctccccagagtacactcccacctctcccaaatactccccc
acctcgccaaagtactccccaacgtcaccgaagtactcgccaacttctcccacctactcc
ccgacaactccaaaatacagccccacctctcctacctactctcccacctcccccacctac
acccccaccagccccaaatactcccctacctcccctacttactccccaacttcacccaag
tactcacccacgtctcctacgtactcgccaactagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacctcccccacctacagcccggccatcagccccgacgac
agtgacgaggagaacaactga
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