Siniperca chuatsi (mandarin fish): 122880791
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Entry
122880791 CDS
T08948
Symbol
polr1a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122880791 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122880791 (polr1a)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122880791 (polr1a)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122880791 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
DDHD
Motif
Other DBs
NCBI-GeneID:
122880791
NCBI-ProteinID:
XP_044062189
LinkDB
All DBs
Position
LG8:24601139..24625738
Genome browser
AA seq
1694 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYSAEEIRKLSVKAITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAIHLL
LNQLRLVDHGAMQEVYQAEQVLSQHLEENPKATGDEIELVLKTFTDTIVGVNTERSENTK
PIKHLVEKKSSLINDFWKIHTKSRKCPYCGSGRFTVRREHNSKLIVTMPSGAQTSDNTDE
DLMAGKRAYMTTSTAREHTNKLWEKEGFFLKCLFSGLEEGTATKEREKCCYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKTAQEEEAPEQTDQ
AFLSGIPGLTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKEGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSASSLAQREAVAKQLLTPCPGPQKMSMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRFQYTELVYRGLTDKPGRVKLLPP
AILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLSVEDILVKPGANKQRKKIIKESLKIGTKALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPSAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIKRSQGLDGVLARLDPQTANRHFAAIQRWRAKREVACPRRGAFLLFS
QKKLAKLKQTEQRTEPDVYGRNAAVLQLVQQWHSLDESSRSKYSRKSSRCPDPSLGLLRP
DVCFGSVSENFHDVTDKYLQSRGTKSQDSLDPHSLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVAGSNIKTPMMSVPVLNNKKALKR
AKTLXKKLTRVCLAEVLQKVDVVETLRIQNHEKLRTFKVTFHFLSPDRYCDDKLLSPQQI
LHYMETRFFRLLLEGIKKRSAKLASIAVETRKATLRDKDNDGDGTADTAGLDDGEGEEER
EIVDDQGNEGDADASDAKRRDKQEEEVDYESSEEDGGDEGEDKEDQEDEEEEGKENVEDT
LEDSQPESAGVRAERKKKQSKRRGGEGQETLNQMRVNSVLESSPAIERYCYDLQHELWCE
VDLVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLGETTTKTGRKETVLNTEGINMH
EMFRHSDILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIQSNSSPLQQMTFETSYKFLKQATMLGSRDQLASPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagaagtgccatggcggcgtttggagggcatgtcgtttggcatgtat
tctgccgaagagataagaaagttgagcgtgaaggcgatcactaacttcaggttcctcgat
gctgttgggaatgtggccccgaacagcctgtacgatctggccctgggaccagcagacagc
aaagaggtgtgttcaacctgctgccaggacttcaacaactgtccaggacacctgggacat
gtagagctacctctacctgtatataacccgctgttcttcgataaactctacctgctgatt
cgtggttcctgtctggcgtgtcacatgttaacgtgtccccgagccgccatccacctgctg
ctgaaccagctgaggttagtggaccatggagccatgcaggaggtctaccaagcagaacaa
gttctcagccagcacctggaggagaatcccaaagccactggagatgagatcgagctggtg
cttaagacgtttacagacacgatagttggagtgaacactgaaaggtcagagaacaccaaa
ccgattaaacaccttgttgaaaagaagagcagtctgataaatgacttctggaagatccac
acgaaatctaggaagtgcccttactgcgggagtggcaggtttacagtccgtcgtgaacac
aacagtaagctgattgtcacaatgccatcaggagcacagaccagtgacaataccgatgag
gatctgatggccggaaagagagcctacatgacgactagtactgctagagagcacaccaac
aaactgtgggagaaagaaggtttcttcttaaagtgtctgttctctgggctggaggagggg
acggcgacaaaggagcgagagaaatgctgctatccagacctcttcttcctggatctactg
gtggtcccaccttgccggtatcgtccgatcaatcgactgggtgaccagatgtttacaaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgcggaatcataaggaaacttctg
gctctcatagcaggggagaaaactgctcaggaggaagaggctcccgaacagacagaccag
gcgtttctgtcggggatccctgggctgacattaacagataaactctacaacatctggatc
cgactacagacccacgttaacatcgtctttgacagtgacatggataaaatgatgaccgag
aaataccctggaatcagacagatcttggagaagaaggaaggcttgttccggaaacacatg
atgggaaaacgagtggactacgctgcacgatctgtcatctgtccagacatgtacataggg
accaacgagataggaatacctatggtgtttgccaccaagctgacttacccgcagcccgtc
actccatggaacgtgaaggagcttcgtcaggccgttctgaatgggcccaacgtccacccc
ggtgcttccatggtgataaacgaggatggcaggagaaccatcctatcagctagcagcctt
gcacagagagaagctgttgccaagcaactgctgacgccctgtcctggtccacagaagatg
tccatgaagatagtgaatcgtcatataaagaacggagatgttttgttgctgaacagacaa
ccgactctgcacagaccctccatacaagcccactgcgcacgtatcttaccaggagagaag
gtactacggctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgaa
atgaacgcgcacttccctcaaagtgagctgggcagagcagaggcctacacgttagttagc
actgaccagcagtacctcgtccccaaggatggtaaacctttagcaggtctgatccaggac
cacatggtatcgggtacgaggatgacgatacgaggctgtttcttcaccagattccagtac
actgagttggtgtacagaggactgactgacaaaccgggcagggttaaactgctgccgccg
gccatactcaaaccacagcaactatggacaggaaagcaggtggtgtccacgctcctgctg
aatgtaatcccacagaaggctgtgcctctcaacctggttggcaaatcaaaaatccccagc
aaagcatggatccaagtcccaccacgagctgctccaggatacagacctgacagcatgtgt
gactcacaggtggttattcgtcagggggagctgttggtgggggtcctggacaaggctcac
tacggctcctcagcctacggcctggtccactgctgctatgagctgtacggaggggagacc
agtggcaaactgctcagctgtctggctcgactcttcactgcttacctgcagctatacaga
ggctttactctgagtgtggaagacatcctggtgaaaccgggcgccaacaagcagaggaaa
aaaataattaaagaatcactgaagattggtaccaaagccctccaggcagccttcaacctg
ccctccaatgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaaccca
gaccagagagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtgaac
aatgacattaacaaggtgtgcatgccagtcggactccacacctctttcccagacaacaac
ctccagctgatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttcg
tgtctgctaggtcagatcgagttggagggccgtaggcctccactgatgccttctgggaaa
tccttgccgtgcttccagccatatgaccctgcacccagtgccgggggcttcgtttctgga
aggttcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcagagag
ggactggtcgacacagctgtgaaaacatctagatcaggatacctgcagagatgtgtcata
aagcatctggagggtttggtggtgcagtacgatcttacggtgagggacagcgatggatct
gtggtccagttcctgtacggtgaagacgggctggatatccccaagactcagttcctgcag
ccaagacagttccccttcatagaggacaactatgaggtcatcaagaggtcccagggcctg
gatggggttttggcccgtttggaccctcagactgccaatcgacactttgcggccatccag
cgctggagagcaaagagagaggtggcgtgtccacggagaggagcgttcttgctgttttcc
cagaagaagttggccaaactgaaacagacggaacaaagaacagagccagacgtctacggc
agaaatgctgctgtactgcagctcgtacagcagtggcactctctggatgagtccagcaga
tcaaaatacagcaggaagtcctcccgctgccctgacccatctcttggcttgttaaggcct
gacgtctgcttcggatcagtgtctgaaaactttcacgacgtcacagacaaatacctgcag
agcagaggcacgaagagtcaagacagcctggacccccacagccttcgccagctgttgcac
tataagtggcagcgttcactgtgtgatccaggtgaagcagtgggtctgctggcagctcag
tccataggcgagccctccacccagatgaccctcaacaccttccactttgccggcagagga
gagatgaacgtcactttgggaatacctcgactgagagagatcctgatggtggccggctcc
aacattaaaacccccatgatgagcgttccagtgctaaacaacaagaaagccttgaagaga
gccaagacgctcngtaagaaactcaccagagtctgtctggctgaggtgctgcaaaaagtg
gatgtagtagaaacattgcggatccaaaatcacgaaaagttgcggacgttcaaagtcacc
ttccacttcctgtctcctgaccgttactgtgacgacaagctgctatcaccccaacagatc
ctccactacatggaaaccaggtttttccgtctcctccttgaagggattaagaagcgcagt
gccaagctggcgtccatcgccgtggaaacaaggaaggccaccctcagagataaggacaat
gatggtgatggaacagctgacacagcagggttagatgatggggagggagaggaggaacga
gagattgttgatgaccaggggaacgaaggagacgctgatgcttcagacgccaagcgcaga
gacaaacaggaagaggaggtggactatgagagttcggaggaggacggaggtgacgaaggc
gaggataaagaagatcaggaggacgaagaggaggaggggaaggagaacgtggaggacact
ctggaggattctcagccagagtctgcaggagtcagagcggagaggaagaagaaacaatca
aaaagaagggggggagaaggacaggagaccttgaatcagatgagagtgaactctgttctg
gagtccagcccggcgatagagagatactgctacgatctccagcacgaactctggtgtgag
gttgacctggtcttgccggtgagcaaggtgcacttcgaccttacctcagttctgtcaaca
ctggcccagaacgccgtcatcatggagaccaaaggcttgacacgctgcctgctgggcgaa
accacgacaaagactggaaggaaagagactgttctcaacacggagggcatcaacatgcac
gaaatgttcaggcacagtgatatcttggacatcaacagactgtactccaatgaggtccat
gccatggctaacacctatgggattgaagtggctctgaaggtcatagagaaggagatcaaa
gacgtctttgctgtctatggcatcgaggtagaccccagacatctgtcactggtagcagat
tacatgtgttttgagggtgtatataagccattaaaccggcacgccatccagtccaactcg
tcccctctgcagcagatgaccttcgagaccagctacaaattcctcaaacaggccaccatg
ctggggtcacgcgatcagctggcgtcaccctcggcctgcctggtggtggggaaggtagtc
aaaggtggaacaggactgtttgaactgaaacagcctctgcagtag
DBGET
integrated database retrieval system
