Siniperca chuatsi (mandarin fish): 122881868
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Entry
122881868 CDS
T08948
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schu03016
]
122881868 (cdkal1)
Enzymes [BR:
schu01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
122881868 (cdkal1)
Transfer RNA biogenesis [BR:
schu03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
122881868 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
122881868
NCBI-ProteinID:
XP_044064495
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Position
LG9:18433499..18689631
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AA seq
576 aa
AA seq
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MKIRKYYISLTIMPSACDSLIEDIEDMVSSSDPTPHERQSARKSIIPRSRKKKELLSHEE
LQADSLIPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPTEADLWLLNSCTVKN
PAEDHFRNSVKKAQEQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKG
HSVRLLGQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASY
PIEELVERARQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMT
NPPYILEHLEEMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLNERV
PGVTVATDIICGFPGETEEDFQETVDLVKIYRFPSLFINQFYPRPGTPAAKMEQVPAHVK
KQRTKELSQLFHSYNPYDHKVGERQHVLVTEESFDAQYYVAHNKFYEQVLVPKRAEFKGK
MIEVYIYEAGKHFLKGRPVEDSKPFTPSIAAPLQKGEVSGLMQEQMANGVQGPASMPPSS
VLLFGSYSLDREVLKKLGIGLALTAAILAFIVEKLY
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataagaaaatattacatcagcttgaccatcatgccgtccgcctgtgactctctg
attgaagacatcgaggacatggtatcttctagcgaccccactcctcatgagagacagtct
gctagaaagagtatcataccaaggtccaggaagaagaaagagctgctgagccatgaggag
ctccaagctgacagtttgatccctggcacccaaaaaatctggatgaaaacgtggggctgc
agtcataacaactcagatggagagtacatggccggacagctagctgccagcggatacaag
attactgatgacccaacagaagcagacctgtggttgctcaacagctgcactgtgaaaaac
cctgcagaggaccacttcagaaactcagtcaaaaaagcccaggaacaggagaaaaaggtg
gtagtagcaggttgtgttccccaggcccagccacggatggactatctcaaaggactcagc
atcattggggtccaacagattgatcgagtggtggaagtagtggacgaagctgttaaaggc
cactcagttcgtctattgggtcagaagaaagatggaggccggaggctcggaggagctaga
ctggacctgcccaagatcaggaagaaccctctcattgaaatcatctccattaacactggg
tgtctgaatgcatgcacctactgtaagactaagcatgccagaggagacttggccagctat
cccattgaggagctagtggagagagccaggcagtctttccaggagggagtgtgtgagatc
tggctgaccagtgaggacacaggagcttatggtagagacatagggacagacctgcccaca
ttgctgtggagattggtagaggagattcctgaaggggccatgctgaggctgggtatgacc
aacccaccatatatcctggaacacctagaggagatggctaagatattgaatcatccacgt
gtctatgccttccttcatgttcctgtgcagtcggcctcagacagcgtcctgatggacatg
aagagagagtattgcatcgatgacttcaaaagagtggtggacttcctcaatgagagggtc
ccaggtgtaaccgttgctacagatataatctgtggttttcctggtgagacggaggaagac
ttccaagagacagtagacttggtgaaaatctaccgattcccaagtctcttcatcaaccag
ttctaccccagacccggtacacctgccgccaagatggagcaagtaccagcacatgtgaag
aagcagaggactaaagagctgtcacagctcttccactcttacaacccctacgaccacaag
gtaggggagaggcaacatgtgttggtgacagaggagtcatttgacgcacaatactatgtg
gctcacaacaagttctatgaacaggtgctggtacctaagagggctgagttcaaagggaag
atgattgaggtgtacatctatgaggcaggaaaacacttcctgaaaggtcgaccagtagaa
gacagtaagccattcactccctccattgctgcaccacttcagaaaggagaggtgtctggc
ctgatgcaggaacagatggccaatggcgtccaaggtcctgcttctatgccgccttcgtct
gttttgttgttcggctcttacagtctggacagggaagtactgaagaagctgggaatcggg
ctcgctctgacagcagccatcttggccttcattgtagagaaactgtactga
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