Styela clava (leathery sea squirt): 120347060
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Entry
120347060 CDS
T07291
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120347060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120347060
Enzymes [BR:
sclv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120347060
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120347060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
AAA_24
CbiA
AAA_18
MMR_HSR1
AAA_16
SRP54
Motif
Other DBs
NCBI-GeneID:
120347060
NCBI-ProteinID:
XP_039272809
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MAVAMTASDEKGINKDMVQDFKVSKENELRFEVEAKERVKLELMDGIAEIFGTELVRTRS
YIFESSSKIAVFTWFGCSIRLTGKLEAAYVSKETPMTIYLNTHAAVELMRRKSQAEELRG
PRVLVVGPQDVGKSTFCKLLLNYATRMGRKPTLIDLDVGQGGISIPGTIAALTVERPSDP
VDGFDTKVPLVYHFGHTSPNGNLKLYEVLISRIADVFNAKSECNLNVRASGCVINSCGWI
KGQGYNCILHAAQSFEADVVLVLDNERLHNDLKRDLPEFVNIVLLPKSPGVVERSRELRR
DHREERIKEYFYGPNKIYFPHAFDVKFSEISIFKIGAPALPDSCLPLGMEEDDTQTKLVP
VRPQRDLVHHILSLSMAESLEENLVETNVAGFVVVTGVDPETETLSVLAPAPYPLPRRHF
LIMDIRFIDINK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcaatgacagcctctgatgagaagggtattaacaaggacatggtacaggat
ttcaaagtctcaaaggaaaatgaattgcgatttgaagttgaagcaaaagaaagagttaag
cttgagcttatggatggaattgctgaaatctttggtactgaacttgtaagaaccaggtca
tatatatttgaatcatcgtccaaaattgctgttttcacctggttcggatgttctataaga
ttgacaggcaaacttgaagctgcatatgtttcaaaagagactccgatgacgatttatctt
aacacccatgcagctgttgagttaatgagacggaaatctcaagctgaagaattgagaggg
ccgcgagtgttggttgttggccctcaagatgtgggcaagagcacattctgtaaactgtta
ttaaattatgccacacgcatgggaagaaaaccaactttaatcgatttggatgtaggtcag
ggtggaatatctatcccaggcaccatagctgctcttacggttgaaagaccatctgaccct
gttgatggttttgataccaaggtaccacttgtttatcatttcggacacacatcaccaaat
gggaatttaaaactctatgaagtgttgatttcaagaattgcagatgtgtttaatgcaaaa
agcgaatgtaatttaaatgtaagagcaagtggatgtgtaattaactcgtgtggatggatc
aaaggacaaggctataactgtatattgcatgcggctcagtcttttgaggctgatgttgta
ttagttcttgataatgaaagacttcacaatgatcttaagcgagacttaccagaattcgtt
aatatagttcttttgccaaaatctcctggtgttgtagaacgatctcgcgaattgcgtaga
gatcacagggaagaacgaatcaaagaatatttttatggacccaataaaatatatttccct
catgcgtttgatgtgaaattctctgaaatctcaattttcaaaattggtgctcctgctttg
ccagactcttgtttgccattgggaatggaggaagacgatacacaaaccaaacttgtacca
gtgagaccacaaagagatttagttcatcacatattgagtctaagcatggctgaatccttg
gaggaaaatcttgttgaaacaaatgttgccggttttgttgttgtaactggtgttgatcca
gagactgagacactgagtgtgttagctccagctccatatcctttaccgcgaagacatttt
cttatcatggatattagatttattgatataaacaagtaa
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