Stutzerimonas degradans: GOM96_18345
Help
Entry
GOM96_18345 CDS
T08431
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sdeg
Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeg03009
]
GOM96_18345 (rimO)
Enzymes [BR:
sdeg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
GOM96_18345 (rimO)
Ribosome biogenesis [BR:
sdeg03009
]
Prokaryotic type
ribosomal protein modification factors
GOM96_18345 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAM_2
Radical_SAM
UPF0004
TRAM
RNase_II_C_S1
CLP1_P
DUF4249
Motif
Other DBs
NCBI-ProteinID:
QGW22871
LinkDB
All DBs
Position
complement(3887374..3888699)
Genome browser
AA seq
441 aa
AA seq
DB search
MSKKAGSIGFISLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAE
SLDAIGEAIAENGKVIVTGCMGVDENNIRGVHPSVLAVTGPQQYEQVVNAVHEVVPPSIE
HDPFIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERL
VKAGVKEILVISQDTSAYGVDLKYKLDFWDGQPVKTRMLELCEALGKMGVWVRLHYVYPY
PNVDDVIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIQKWREICPELTIR
STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAEAMGLEPVPDEVKQDRW
DRFMAHQQAISAARLQLKVGREMDVLIDEVDEDGAIGRSWADAPEIDGMVYVDSEQPLQP
GDKVRVRVTNADEYDLWAEVI
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaagcaggaagtatagggtttatttcgctcgggtgcccgaaagcaaccgtt
gactccgagcgcatcctcacccagctgcgcatggagggttaccagatcgtgccgtcctac
gaggatgccgatgtggtggtggtcaacacctgcggtttcatcgacagcgccaaggccgaa
tcgctggacgccatcggcgaggcgatcgccgagaacggcaaggtgatcgtcaccggctgc
atgggcgtggacgagaacaacatccgcggcgtgcaccccagcgtgctggccgtcaccggc
ccgcagcaatacgagcaggtggtcaacgcggtgcatgaagtggtgccgccgagcatcgag
cacgatcccttcatcgacctcgtgccgccgcagggcatcaagctcaccccgcgccactac
gcctacctgaagatttccgaaggctgcaaccacagctgcagcttctgcatcatcccgtcg
atgcgcggcaagctggtcagccgcccggtcggtgacgtgctgtccgaggccgagcggctg
gtcaaggctggcgtgaaggagattctggtgatcagccaggacaccagcgcctacggcgtg
gacctcaagtacaagctcgacttctgggacggccagccggtcaagacgcgcatgctcgaa
ctgtgcgaagcgctgggcaagatgggcgtatgggtgcgcctgcactacgtctatccgtac
ccgaacgtcgacgacgtgatcccgctgatggccgccggcaagatcctgccgtacctggac
atccccttccagcacgccagcccgaaggtgctcaaggccatgaagcgcccggccttcgag
gacaagaccctggcacgcatccagaagtggcgcgagatctgccccgagctgaccatccgc
tccaccttcatcgtcggcttccccggcgagaccgaagaagacttccagtacctgctcgac
tggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactcaccggtcgacggc
gcaccggccgaggcgatgggcctggagccggtgccggacgaggtcaaacaagaccgctgg
gaccgcttcatggcccaccagcaggccatcagcgcagcgcgcctgcagctgaaagtcggc
cgcgagatggacgtgctgatcgacgaagtggacgaagacggcgccatcggccgctcctgg
gccgacgcaccggaaatcgacggcatggtctacgtcgacagcgaacagccgctgcagccg
ggcgacaaagtccgtgtacgcgtcaccaacgccgacgagtacgacctctgggccgaagtg
atctga
DBGET
integrated database retrieval system
