Shewanella denitrificans: Sden_2566
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Entry
Sden_2566 CDS
T00344
Name
(GenBank) thiamine biosynthesis protein
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn00730
Thiamine metabolism
sdn01100
Metabolic pathways
sdn01240
Biosynthesis of cofactors
sdn04122
Sulfur relay system
Module
sdn_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Sden_2566
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
Sden_2566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_2566
Enzymes [BR:
sdn01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
Sden_2566
Transfer RNA biogenesis [BR:
sdn03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Sden_2566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ABE55845
UniProt:
Q12L31
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All DBs
Position
complement(3070460..3071920)
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AA seq
486 aa
AA seq
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MKFIVKLYPEIMMKSKSVRSRFTKMLETNIRNVLKKVDEDAKVQRQWDRIMVRVPADRPE
LVDAFAERLGCIPGIAHVVQVNEYTFDSVDHIYQQVLPLYREQLAGKTFCVRVKRTGQHD
FKSIEVERYVGGGLNQHTDAVGVKLKNPDLTINLEIDHEKLYMVVRRIEGLGGFPMATQE
DVLSLISGGFDSGVSSFQFIKKGARTHYCFFNLGGSQHEIGVKQVAYHLWKTYGESHKVK
FISVPFEGVVQEILERIDNGQMGVILKRVMMRAATLLADKYGIQALVTGESLGQVSSQTL
TNLNVIDRCTDLLILRPLIAMDKQDIINQSRIIGTEDFAKSIPEYCGVISQKPTVKAVLS
KIEAEELKFSENLIENIVAQAKVIDIKDIAIEMDNQIAAAEAETVVAVDTQEVVIDIRAQ
EEEEKNPLSLPGKTVMTIPFFKLSTQFADLDKSVTYLLYCERGVMSKLQALYLIEQGYTN
VKVYRP
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatcgtaaagttatacccagaaatcatgatgaagagtaagtcggtgcgctcg
cgttttactaaaatgcttgagaccaacatacgcaatgtccttaaaaaagttgatgaagat
gccaaagtgcagcgtcaatgggacaggatcatggttagagtaccggcagatagacctgaa
ttggtggatgccttcgccgagcgtttaggctgcattccgggtatcgcccacgtagtgcaa
gtgaatgaatacacctttgattcagtcgatcatatctaccagcaagtgctgcctttatat
cgtgagcaacttgcgggtaagaccttctgtgttcgcgttaagcgcactggtcagcacgat
tttaaatccatcgaagttgagcgttatgtcggcggcggcttaaatcagcacaccgatgcg
gttggggtaaaacttaaaaacccagatttaaccattaacctagaaatcgaccatgagaag
ctatacatggtggtgcgccgcatcgaaggtttgggcggttttcctatggccactcaagaa
gatgtgctgtcgctcatttctggtggttttgactcaggggtttcaagctttcagttcatt
aagaaaggggcccgtacccattattgtttcttcaaccttggcggctcacagcatgagatt
ggcgttaagcaggtggcttatcacctgtggaaaacctatggtgaatctcataaggtgaag
tttatctctgtgccgttcgaaggtgtggtgcaagaaattcttgaacgtatcgacaacggt
caaatgggagttattctaaagcgggtgatgatgcgcgctgcgaccttgctggcggataaa
tacggcattcaagcattagtcacaggtgagagcctaggtcaggtatcgagccagacattg
accaatttaaacgtgattgatagatgcacagatttgttaatcttgcgtcctttaatcgcc
atggacaagcaagatatcatcaaccagagccgcattattggcaccgaagattttgcaaag
tctattcctgagtattgtggcgtgatttctcaaaagccaacggtgaaagccgtattgtcc
aagattgaagccgaagaacttaagttttctgaaaacttaattgaaaacatagtggctcaa
gcgaaagtcatcgatattaaagatatcgccatcgaaatggacaaccaaatcgcggccgcc
gaagcagaaactgtagttgctgtggacacgcaagaagtggttatcgacattcgcgctcag
gaagaagaagagaaaaacccgttgagcctgcccggcaaaactgtgatgactatccctttc
tttaaactgtctactcagtttgcagacttagacaaatcagtcacttatttgctttattgt
gagcgcggcgtgatgagtaagcttcaggctctatacttgattgagcaaggttacactaac
gttaaggtgtatcgtccttaa
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