Seriola dumerili (greater amberjack): 111232652
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Entry
111232652 CDS
T05606
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111232652 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111232652 (clp1)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
111232652 (clp1)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111232652 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
111232652
NCBI-ProteinID:
XP_022615986
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MATEGVEKTSEDVPAAGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRNKKYTFGAGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDARDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTYVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgtggaaaagacgagtgaagatgttccagcagctgggaaggtcagc
accaggttcgacctggagaaggagactgaacttcggtttgaggtggaggcaggagaggca
gcagagcaagttgagctggagctcctcacaggaatggctgaggtgtttggctcagagctg
aaccgcaacaagaagtacacatttggagcaggctctaaaattgcagttttcacctggcaa
ggttgcagtgtgaatctttatgggaaaccagaggtggcttatgtgtccaaggacactccc
atgctgctctacctgaacacacacgctgccctggaacagatgagaaaacaagcagagcgg
gacaatgagagggggccaagggtgatggtggtgggacctacagatgtggggaagtccaca
gtgtgccggcttctattaagctatgctgtaagggtgggcaggaggccaacactggtggaa
ctggatgttggacagagtggggtgtctgtacccgggacagtgtctgcactgtgcattgag
cgtccggcagacgtggaggagggtttctcagtccaggctcctttggtctatcactttggc
tctactaccccagggaccaacatcaaactttacaacaagctgacgtcatgcttggccgag
gtgttttcccagcgctgtgaggtgaacaggaaggccagcgtgggaggctgtatcatcaac
acttgcggctgggtgaagggctctggatatcaggcactggtccactgtgcctctgctttt
caagtggatgttgtgctggtgctggaccatgagaggctctacaatgaactcaaacgagac
ctccctcactttgtgcgggttgtgctcctacccaaatctgggggtgtggtggagcgctcc
aaggagtgccggcgggatgcgcgggatgagaagatccgcgagtatttctacggcttccgt
ggggtgtccttctaccctttttcctttgaagtgcgtttctcagacgttcgcatctataag
ataggggcaccatccatcccagactcatgcctgccactgggaatgtctcaggatgacaca
cagctaaagctggtgcctgtgacaccagggagggacctcacgtatcatgtgctgagtgtg
agcagtgctgaggacggagaggaaggtgctagaaagggtatagtggagagtcctgtgtgt
ggcttcattgtggtgacttatgtagacacgcaaacacaggtgatgaaagtgctgtcccca
gcgcccagaccactgccaaggcacactctgcttatcatggacatccgcttcatggacatg
aaatga
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