Solanum dulcamara (climbing nightshade): 129875962
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Entry
129875962 CDS
T09577
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129875962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129875962
Enzymes [BR:
sdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129875962
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129875962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF6322
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
129875962
NCBI-ProteinID:
XP_055807199
LinkDB
All DBs
Position
12:2528503..2554521
Genome browser
AA seq
1674 aa
AA seq
DB search
MNQGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLGLPVSNGLYDPAMGPLDDRAQ
CKLCGQSLCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEIEKCVSELE
LIAKGDVVGAKMMDALSPDNSTDREESEGSHMSCTMDDLNMQDHCEYNKRPSWDNFQFTE
AMAVIDRILKTKTVKCSNCQAKNPKISKPSFGRFRMDISSKQITENYINGGRMFNLHYTG
GSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKARKRQGGEQPDVVVQQKDSFSVAH
LPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPDKVAGPSMFFLDSILVPPIKFRPPAK
AGDSIMEHPHTVLLGKVVQSNMALGNAHINQAGRSKIISRLMDLQQSVNVLFDSKTASGP
GQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTY
PERLTPWNAAKMRDAIINGPENHPGAVSFADRIATAKLPSSKKMRVAISRKLPSSRGAVT
QSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS
TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSAVILTM
KNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTILPAVWKPKPLWTG
KQVITALLNHLTNGCAPCTVKNKGKIPYPYFLSQSRLVEYQSREEEDRTAENKFLIWKNE
LVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILP
HYDIRRKEELEGDDVGEEAHCDFVKFKRGELGPLELQLEIEKAISSNKEAATAALDMKMK
NKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRV
PRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG
YLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQESIC
QKLRHGCKLNSYIEKLPDGLEEKVKHFWEKKTKKLEKNLGKLVKKEEILKQLKKEEVDFL
ELVVQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM
TASDAIKTPIMTCPFLNWKSKNDAQSLLAKVKKITVADMIESMVVNLLPLSIYNHQVSQL
YKLTVKLKKHDFVSSEDCEYTLKYVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSN
ETEENASSTRHEEEMLDDDDEDEDERTEDLSSDAQKRKQQTTDDMDYDDDEDEDEAETTA
EVEDGKSEQADEIGTDDEEEIGDHGNEEQTSKLQPTEEDISNTKTSKLKTKTTVKQKIKK
ERPSRKDSDKNVFVAVEGLHFEIHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMV
KYEVTENTVMWDENQTKKQSLDTDSAYWALKAAGVDFGAFWEMQDDLDVTRIYTNNIRAM
LNTYGVEAARASILREIKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLS
PFLKMSFETASKFIVEAAAHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagggtgcatcagaggccgttgaggcggtccacttcagtttcatgacagatgaa
gaagttcgtaggcatagtgttgtaaaagtcacaagccctaatttgcttgatggattaggg
ctaccagtgtctaatgggctctatgatccggcaatgggtcctcttgatgatcgtgctcaa
tgtaaattatgtggccaaagtctctgctctggtcactgtggtcatattgaacttgtttct
cctgtctacaatcccttgcttttcaatatgctgcacaatcttctgcaaaggacatgcttt
tattgcttccattttagggcatcaagagcagagattgaaaagtgtgtttctgaattagag
ttaattgcaaaaggtgatgttgttggggccaaaatgatggatgccctttctcctgataac
tctactgatcgggaggaaagtgaagggagccatatgtcatgtacaatggatgatttgaat
atgcaagatcattgtgagtacaataagaggccatcttgggataacttccagtttactgaa
gctatggcagttattgatagaattctcaagacgaaaactgtgaaatgtagcaactgccaa
gcaaaaaatccaaagattagcaaacctagttttggacggtttcgtatggatatctcaagt
aagcaaattacggaaaattatatcaacggtggtcgcatgttcaatctgcactacactggt
ggaagtgaggaaaatccttcccctgaggttgtaaatgccaccgagccgttaggggaggct
gaaaccagcttatgtgtgacttccacagatggagtagaaaattctaaggcacgcaagagg
caagggggtgaacagcctgatgtggttgtgcaacagaaagactcattttcagtggcacat
ttaccatctcaggtcagaaatattatagagcatttatgggaaaacgaagctcctctttgc
acattcttctgtgatattcagagccagcaccgtaatacacctgacaaggtggctgggccc
tctatgttctttttggattccattcttgtaccaccaatcaagttccgtcctccagccaaa
gcgggtgactctattatggaacatccacatactgttcttcttggtaaggtcgttcagtca
aatatggctttgggaaatgctcatatcaaccaggctggaaggtctaagatcattagccgc
ttgatggatcttcaacaatctgtaaatgtgctgtttgatagcaaaacagcttctggtccg
ggtcaaaaagatgttggttcgggcatatgtcaaatgttggagaagaaagaaggtattttc
cgccagaaaatgatggggaagagagtcaattttgcctgccgatcagttatatctccagat
ccttatttatccgtcaatgaaattggaattccaccatattttgctttaaggctaacctat
cccgagaggttgactccttggaatgctgctaaaatgagagatgctatcatcaacgggcct
gaaaaccatcctggcgctgtctcttttgctgatagaatagctactgcaaaactaccatca
agcaaaaagatgcgtgtagcaatatctagaaaattgccttcttcaaggggggcggtgact
caatctgggaggaacaatgagtatgaatttgaaggcaaagtagtttatcgtcacttacaa
gatggggatgttgttcttgtgaatcgacagcctacgcttcacaagcccagtataatggcc
cacgttgtccgcgtactgaaaggagagaaaactcttcgcatgcactatgctaattgcagt
acctataatgccgattttgacggtgatgaaatgaatgtccactttccacaagatgaaatt
tctcgtgctgaagcatacaacattgtaaacgctaatgaacagtacattgttccgactaag
ggagatacagttagaggcctgattcaggatcatattgtaagtgcagtgattcttaccatg
aagaatacttttttgacccttcatgagttcaatcagcttctgtatggatctggtgtgttt
gccgctgggcctgctccaacttctggaaatcattcaaataaagtttctgtagtagatttt
gaaggtgttgtgcagactatcttgcctgctgtgtggaaaccaaagcctctttggacaggg
aagcaggtcatcactgcattactaaatcatctgacaaatggttgtgcaccttgtaccgtc
aaaaacaaagggaaaattccatatccatatttcctgagccagagtcgcctagttgagtat
cagtcaagagaagaagaagatagaaccgctgaaaataagttcttaatttggaaaaatgag
ctcgtgcgtggtgtaatcgacaaggctcagtttggaaagtttggtttagttcacacaatt
caggagctttatggatccaacaaagcaggcattttactttctgctctgagtcgtttattt
actattttcttgcagttgcatggcttcacttgtggtgttgatgatctcgtcatcttacca
cattatgatattcggaggaaggaagaacttgaaggagatgatgttggtgaagaggctcat
tgtgattttgtgaagttcaagcgtggagaattaggccctttggagctccaactagaaatt
gagaaagcaataagcagcaacaaagaagctgccacagcagccttagacatgaaaatgaaa
aataagttggcaaataaaggctcacaatttaataaagagttgctgctgaaaggattgttg
aaaccttttcccagaaactgcatcgcccttatgacaattactggggcaaaggggagtacg
gttaattttcaacaaatttcctcgtatctgggccaacaagagttggaaggaaaacgagtg
ccacgaatggtttctgggaagactttaccctgttttccaccatgggattgtgcttctagg
gcaggaggttatgttagtgatcgctttctttctggacttcgtccccaggagtactatttt
cattgcatggctggtcgtgaaggattggttgatactgctgtcaaaacatctcgcagtgga
tatctgcaaaggtgtttgataaaaaacctggaatctcttaaagtctgttatgattatact
gtccgtgatgcagatggttcaattatccaattttattatggagaagatggtgttgatgtg
catcgaacgagttttctcaaaaacttcaaagcactgaaaaataatcaagaatccatttgc
caaaagttgcggcatggatgcaagctcaattcctatattgagaaattgcctgatggcctg
gaagaaaaagtgaagcacttctgggagaaaaaaacaaaaaagttggagaaaaatttaggg
aagctagtgaaaaaggaagagatactgaagcaactgaaaaaggaggaggtggactttcta
gaactagtggtgcaaaaatacttctcaagtttggcagattcaggagagccagttggtgtc
cttgctggtcagtcagtaggtgaaccttcaacccaaatgacactgaacacttttcatctt
gcgggccgtggagaaatgaatgtcactcttggaattccacgtcttcaggagattctgatg
actgcctctgatgctattaagactcccatcatgacgtgccccttcctcaactggaaatcg
aagaatgatgcgcagtctcttttggcaaaagtgaagaagatcactgttgcagatatgatt
gagagtatggtggtcaatcttttgccattatcaatctacaaccatcaagtttctcaactt
tacaagctcacagtgaagctcaagaagcatgattttgtgtcatcagaagattgcgagtat
accctaaaatatgtgttcttaagggagttggaggatgcaatagaaagtcatttggccttg
ctctctaaaattaatggcatacagaacttcaagacaagctcggaatcagtcgattcaaat
gagactgaagaaaatgcttctagcaccagacatgaagaagagatgctggatgatgatgat
gaggatgaggatgaaagaactgaagatctcagttcagacgcacaaaaaaggaaacaacaa
accacggatgacatggattatgatgatgatgaagatgaagatgaagctgagaccactgct
gaagttgaagatgggaaaagtgaacaagcggatgagattggtactgatgatgaagaagaa
attggagaccatggcaatgaagagcagacgtctaagttacagcctacagaagaggacata
tcaaataccaaaactagtaagttaaagactaaaacaactgtcaaacagaagataaagaaa
gaaagacctagcagaaaggattcagataagaatgtctttgttgctgtggaaggactgcat
tttgagatccactttagattcgtcaatgaacctcatattttgttagctcaggttgcccaa
aagactgcaaagaaagtgtatgttaagaactctggtaaaatcgaccagtgcagaatggtc
aagtatgaagtaactgaaaatactgtgatgtgggatgaaaatcaaacaaagaagcaaagc
ctagatactgattctgcttattgggccctgaaagctgctggagtggattttggtgccttc
tgggaaatgcaagatgaccttgatgttactcgtatatacactaataatattcgtgctatg
ctgaacacctatggagttgaagctgctcgggcatcaatcttaagagagatcaagactgtt
ttcggtatatatggggtggagattgattttcgacatttgagtctaatagccgactacatg
acccatactggtggataccagccaatgagcagacatggaagcatatccgagtctctttca
ccgttccttaagatgtcgtttgaaacggcttccaaattcatagtcgaagcagcagctcat
ggtttaactgactacttggagacaccatcctccagaatttgcttaggtttgccagttaag
atgggtactggttgttttgacataatgcagaagctagatatttga
DBGET
integrated database retrieval system
