Solanum dulcamara (climbing nightshade): 129876407
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Entry
129876407 CDS
T09577
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00100
Steroid biosynthesis
sdul00909
Sesquiterpenoid and triterpenoid biosynthesis
sdul01100
Metabolic pathways
sdul01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
129876407
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
129876407
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
sdul01006
]
129876407
Enzymes [BR:
sdul01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
129876407
Prenyltransferases [BR:
sdul01006
]
Terpene biosynthesis
Squalene/phytoene synthase
129876407
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
129876407
NCBI-ProteinID:
XP_055807818
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Position
12:complement(17515095..17540093)
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AA seq
411 aa
AA seq
DB search
MGILRAILKHPEDIYPLLKLKVAARYAEKQIPSKPHWAFCYIMLHKVSRSFSLVIQQLPV
ELRDAICIFYLVLRALDTVEDDTSVATEVKVPILMSFHRHVYDREWHFSCGTKDYKVLMD
QFHHVSTAFLELGKHYKEAIEDITMRMGAGMAKFIYKEVETIDDYDEYCHHVAGLVGLGL
SKLFCASGKEDVASDTLCNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPRQIWSKYVNKL
DDLKYEENSVKAVQCLNEMVTNALSHVEDCLTYLSTLRDPAIFRFCAIPQVMAIGTLAKC
YNNIEVFRSVVKMRRGLTAKVIDRTRNMADVYGAFFDFSCILKSKVEYKDPHVAKTLKRL
EVILRTCKASGTLNKRKSFVIKSGPNYNSTFVVVLVVIMAVLLGYQSGNQP
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggggattttacgtgctattctgaagcatcctgaagatatttatccattgttgaagctg
aaggtcgcggcacggtatgccgagaagcagatcccttcaaagccacattgggccttctgt
tacatcatgcttcacaaggtctctcgtagcttttctctcgtcattcaacagcttcccgtc
gagcttcgcgatgccatatgcattttctatttggttctgcgagcgcttgacactgtcgag
gatgataccagtgtagcgacagaggtaaaagtacctattttgatgtccttccatcgccat
gtttatgatcgtgaatggcatttttcatgcggtacaaaagactacaaggttcttatggat
caattccatcatgtttcaactgcttttctggagctagggaaacattacaaggaggcaatc
gaggatattaccatgaggatgggtgcaggaatggcaaagtttatatacaaggaggttgaa
acaattgatgattatgatgaatattgtcaccatgtagctgggctcgttggattaggctta
tcaaaacttttctgtgcctctgggaaagaagacgtggcttcagatactctctgcaactcc
atgggtttatttcttcagaaaacaaatatcattagagattatctggaagacataaatgaa
gtacccaaatgtcgcatgttttggcctcgtcagatttggagtaaatacgttaacaagctc
gacgacttgaagtatgaggagaattctgtcaaggcagtgcaatgtctgaatgaaatggtc
actaatgctttatcacatgtagaagattgtttgacttacttgtctacactgcgggatcct
gctatctttcgattctgtgcaattccacaggtcatggcaattgggaccctggcaaagtgc
tacaacaacattgaagtcttcagatcagttgtaaaaatgagacgtggtctcaccgctaag
gttattgaccggaccaggaacatggcagatgtatatggtgctttcttcgacttctcttgt
attctgaaatccaaggtagagtataaagatccacatgtggcgaaaactttaaagaggctt
gaagtgatcttgagaacttgcaaagcctcaggaaccttgaacaaaaggaaatctttcgta
atcaagagtggacctaattacaattcaactttcgttgttgtccttgttgtcataatggct
gtccttcttggataccaatctggtaaccagccttag
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