KEGG   Solanum dulcamara (climbing nightshade): 129889970
Entry
129889970         CDS       T09577                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    129889970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sdul03021]
    129889970
Enzymes [BR:sdul01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     129889970
Transcription machinery [BR:sdul03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     129889970
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 Ribosomal_L36
Other DBs
NCBI-GeneID: 129889970
NCBI-ProteinID: XP_055821431
LinkDB
Position
5:complement(76792010..76813591)
AA seq 1445 aa
MGHDLNIEQQVPEGILRGINFSILSETDAAKLSAKVIGVVNEVTDPALGFPNPIFQCSTC
GANDGKKCEGHFGLINFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGADRTSACKY
CDGIFRGYPPTKFKVSPKDMFGRTAIIAEVNENLLKKLQQTTGGSLASDYWDFIPYDAQQ
EASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKNCLLTPNSHRVTEFGQH
MIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRSVINDPNAPPTGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESVSLRNWERMTDLCDLMILQRG
GILVRRNGDLVRISVMDRLQRGDIIHRPLIDGDVVLINRPPSIHQHSLIALSVRILPINS
VLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALNQQLLDGQNGQNLLSLSHD
SLTAAHLILESGVFLDRFQMQQLQMFCPRQGVMTAIVRAPSGNMCYWTGKQLFSLLLPSD
FEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHHGGDTLDLLYAAQTVLCEW
LSIRGLSVSLSDLYISSDSYSRENMIDEVFSGLQEAERLSYIQLLMIKYNKDFLSGSIEE
SKNSMGFDLEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSFLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPC
AVVKNSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIEYDGTVRNA
YGNQIVQFSYYEAEQIASTKGTGEALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSA
LESSPLLNLKKILESGGGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEV
VSTVMICFSPETRKSTHNCPWVCHFHIDKEIVKTRRLKLRSVLDALNMRYRAATKKAGND
LPNLHITRKDCSVAEARKEKSEICITVSMVETSKDPSSLLDTLRDVVIPFLLETVIKGFS
AFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWER
SYPDDVHDLTVAYGVDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSA
KGLTLQRKAAGVVSPFMQACFSNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSS
FDIIFSGKGYEPAEPKDVYALLGNFVTSDKPTVKVTLDEDNEMDGKSLARRLYKLDDLNK
KSCKSQWLIANLRSFLSFNDIKKLSQSLKQMLSKYAIDRELSEADKSIVMMALQFHPRRS
EKIGKGAQEIKIGYHKEYEDSRCFMLVRSDGTVEDFSYRKCMQHALELIAPQKAKTSKWL
NGASA
NT seq 4338 nt   +upstreamnt  +downstreamnt
atggggcatgatctgaatattgagcagcaagtgccagaaggtattctgagaggcataaat
ttcagtatcttatcagagactgatgcagccaaattgtcagctaaggtaattggagtagtt
aatgaagtaacagatccggcgttggggtttccaaatccaatctttcagtgttcaacatgt
ggtgcaaacgatgggaaaaaatgtgaaggtcattttggtttaataaacttcccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcctgaagaaaatatgcccagga
tgtaaatctgtgcgtcgtgataaggtcaagggtgctgataggacatctgcttgcaaatac
tgtgatggaatttttagaggttatccgccaacaaaatttaaagtatctcctaaagacatg
tttgggaggactgccattatcgcagaagtgaatgagaatttgttaaagaagcttcagcaa
actactggaggaagtttggcttctgactattgggatttcatcccatatgatgcacaacaa
gaagcaagtgtaaattcgtcaaattacaaaagagttttatcacatgctcaggtatatagc
attctgaaagatattgatccagggtttcttgaaggacttctcagaaggaagaactcaatc
ttccttaaaaactgccttttgactcctaatagtcatcgtgtcacagaatttgggcagcac
atgatatttgatgaaagtaataggctttacagaaagttgatagactttagagggacagca
aatgacttgagcatgtgtgttttagatagaattaaagtttccaagatacgtgcagataga
tctgtaatcaatgatcctaatgcccctcctactggtttgaagtatgtgaaagaattggtt
ctggcaaaacgcactaatcatgctttccgcatggttgtagttggtgatcctaacatagag
ctaggtgaaattggtattccatgtcatgttgctgagaatctccacatggcagaatctgta
agcttacggaattgggaaaggatgactgatctctgtgatcttatgattcttcagagagga
gggattcttgtccgtagaaatggtgacttagttcgtattagtgtaatggaccggttgcag
agaggggatattatacatagacctcttattgatggagatgttgtgttgataaatcgacct
ccgtctattcatcaacactcactaattgctctgtctgttaggattcttccaataaattct
gttctttctatcaatccccttgtctgttctccattccgtggggattttgatggtgattgc
cttcatggttatattccccaatcaatcgattctaggattgagcttagtgagcttgttgct
ctgaatcagcagttgcttgacggacagaatggtcaaaatcttctttcattaagtcatgat
agcttgactgctgctcatttaattttggaatctggagttttcttggaccgcttccagatg
cagcagctacaaatgttttgtccccgtcaaggggtgatgacggctatcgtaagagcacca
tcaggaaacatgtgttattggactggtaaacagttattcagcttgcttttgccatcagac
tttgaatatgtttttccatcaaatggtgtctgtattagtgagggggaaattgtgacatct
tctggtgggtcttcttggctgcgtgatgccagtgataatcttttttatagtcttgttaaa
caccatggaggtgacactcttgacctcctttatgctgcacaaacagttctttgtgagtgg
ttatcaataaggggccttagtgtttcattgtccgatctttacatatcttctgattcatat
tcccgcgaaaatatgattgatgaagtcttttctggtttgcaagaagcagaacggttatct
tatatccaattgctgatgataaagtataataaggatttcctttctggaagcatagaagaa
agcaagaattccatgggttttgatttggagtttatgtccatcatgcagcagaaatcagct
tccctgagtcaagcttctgctagtgctttcaagaaagttttccgggatatccagaatttg
gtatataattatgcaagcaatgacaattcatttctggctatgttaaaagctgggagtaag
ggcaatctgctaaaactggtccaacacagcatgtgtcttggtttgcagcagtctttggtt
ccagtatcatttagaatgccccgtcaactttcttgtgatgcatggaacaatcataaatca
catcttgttattgagaaaccgcataaagttcctgaatgtcctggttcttacatcccgtgt
gctgtggttaaaaattcatttcttgcgggtttgaatcctctagagtgttttgtgcattca
ttaaccacccgtgatagctcttttagtggacatgctgatgtttctggaactttgaaccgc
aagcttatgtttttcatgcgtgatctgtacattgaatatgatggaacagtgagaaatgct
tatgggaatcaaattgtgcagttctcttactacgaagcagagcaaattgcttctactaag
ggcactggtgaagccctagaaagtcataaccatgcaattggtggtcatcctgttggttca
ttggcagcctgtgccatttcagaagctgcatacagtgctttggatcaacctgtcagtgca
cttgagtcatcacctttactaaacctgaagaaaatattggaatctggaggagggagtcgt
agtggcgagaaaactgcatcaatgtttctttcaaaaagacttggccgatgggctcatggt
tttgaatatggagctttagaggtcaagggtcatctggaaaggcttcttctttcagaagtt
gtttctacagtaatgatatgcttctcccccgaaacacgtaaaagcactcacaattgtccc
tgggtctgtcattttcatatagataaggaaatagttaagacgagaaggctgaagttgaga
tcagttttagatgctcttaatatgagatatagagccgcaacaaagaaagctgggaatgat
cttccaaatctgcatataacacgcaaggattgttcagttgctgaagcccgaaaagagaag
tccgaaatttgcatcactgtttctatggttgagacctcaaaagatccttcttcacttctg
gatactcttcgtgatgtggtgattccattccttcttgagacggtgataaaaggtttctcc
gcatttaaaaaagttgatatcttatggaaagagttgccaagtccttcaaaatcttccaga
ggctctaccggggaactgtatttgcaggtcttcatgtcagaaagctgtgacagaatcaaa
ttctggaatgcgcttgtggatagttgcctccagataagggatttgattgattgggaacgc
agttatcctgatgatgtccatgatctgactgtagcctatggagttgatgtagcatgggag
tactttctatgtaaactacattcagctgtctctgaaactggcaagaaaatccttcccgaa
cacttggtacttgcagcagatagtctcacagctacaggagaatttgttcccttgagtgcc
aaagggctgacgctgcaaagaaaggctgctggtgttgtttcaccatttatgcaagcgtgc
ttttcgaatccaggggactcatttgttagggctgccaagatgggattaagtgacgatctt
caagggagtcttgaatcattggcatggggaaagactccttccatagggactggttcttca
tttgacattatcttctctggaaagggatatgagcctgctgaaccgaaagatgtgtatgct
ctgctgggcaactttgttacatcggataagccaacggtgaaggtcactcttgatgaagac
aatgaaatggatggaaagtctcttgctcggcgtctttataagcttgatgatctcaataag
aagagttgtaaaagccagtggttaattgcaaatctgagaagtttcctttcattcaacgac
ataaaaaagctctctcagtcattgaaacaaatgttgtccaaatatgctattgatcgtgaa
ttgagtgaagcagacaagtccatagtaatgatggcattacaatttcatccccggaggagt
gagaagattggaaaaggagcacaggaaattaagattggttaccacaaagagtatgaagat
tcccgctgctttatgttggtgcgttcagatggaacagttgaagacttctcttatcgcaag
tgtatgcaacatgctctggaactgattgctcctcaaaaggcaaaaacctctaaatggttg
aatggagcatcagcataa

DBGET integrated database retrieval system