Solanum dulcamara (climbing nightshade): 129893489
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Entry
129893489 CDS
T09577
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129893489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129893489
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129893489
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
129893489
NCBI-ProteinID:
XP_055825000
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Position
6:37879885..37924547
Genome browser
AA seq
1087 aa
AA seq
DB search
MQRQKTLLSYLKKPAPEDQSSSDNTINGRKFQSKTAVPIFSTIDVKEEILGTETPPEKGP
LPFNNRHDENKSSVFSSIKHKFIKVHSREKPRDLAKDDPCKISSVCTKNEGSDRLGNASV
SLQSGTNRSFVSSNGNSNQEGKGLVSLIPSDDHGFRPETPSMQPFVPGLKRVHDNICSSG
DRSDCFSLNASKRIKSLEGLNFERKNLDEEFEMTSKFEWLHPYQIKDANGRRPGDPLYDK
QTLYIPPDAWRKMSASQKQYWDVKCKYIDIVLFFKVGKFYELYELDAEIGHKELDWKMTL
SGVGKCRQVGISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVLT
PSTASEGNIGPDAVHLLAVKETWNELGNGSIIIGFAFVDCAALKVWVGSFDDDASCAGLG
ALLMQVSPKEVIFNARGLSKDAQKALKKYSSTGPAAPLLSPVQPGAEFVDPAEVKNFLDL
KGYFKGSCNKWDHAVDGENHDVALCALGTLVNHLERLMLDEVLHNGDVLSYEVYKGCLKM
DGQTLVNLEIFNNNADGSPSGTLYMYLDNCITSPGKRLLRRWICHPLKDVEKINHRLDVV
DRLVENSDATLSTAQYLCKLPDLCRLLGRVKASIQSSEALLLPLIGAKILKQRVKVFGLL
VKGLRIGLDLLRLLQKEYLTSSLAKVVSLPVLDGDNGLDKFLTQFEAAIDSDFPNFQDHN
ATDFDAETLSILMELFIEKATEWSQFIYAISCVDVLRSFSITAKFSSGVMCRPVILPLSK
PSNFCKEAGGPTLNIKGLWHPYALGESGGLHVPNNLHLGGNANIRYPRSLLLTGPNMGGK
STLLRATCLAVIMAQLGCYVPGETCVLSLVDIIFTRLGATDRIMTGESTFFIECTETASV
LQNATYNSLVLLDELGRGTSTFDGYAIAYAVFRHLVEMVNCRLLFATHYHPLTKEFASHP
HVTLQHMACSFKMKSQSSSPTEQELVFLYRLASGACPESYGMQVALMAGIPKTVVESASS
AGQVMKKMNGESFRSCKRRANFSTLHEEWFRTLLEISKTDGGFNNDNDLFDTLFCLWHEL
NADRSTC
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcagaaaactttactttcgtacctcaagaaacctgcgccggaggaccaaagc
tccagcgataacacaatcaatggccggaaatttcaaagtaaaactgcagttccgattttt
tccaccatagacgttaaggaagaaatattgggaactgaaactcctcctgagaaggggccg
ctcccgttcaacaatcgacatgatgaaaataagtcttctgttttctcttctattaagcac
aagtttatcaaggtccatagcagagaaaaaccacgggatctagcgaaagatgatccttgt
aagatctcctctgtttgtacaaaaaatgaaggatcagacagattgggaaatgcttctgtt
tccttacaatcaggcactaatagaagttttgttagttctaatggaaacagtaatcaagag
ggtaaaggattagtatctcttataccaagtgatgatcatggttttaggccagaaacacca
agtatgcaaccttttgtacctggattaaagcgagtccatgacaacatttgttcctcaggg
gataggagtgattgcttttcattgaatgcgagcaagagaattaaaagtcttgagggcttg
aattttgaaaggaagaaccttgacgaggagtttgaaatgactagcaagtttgagtggctt
catccatatcaaatcaaggatgcgaatggtagaaggccaggggacccactctatgataag
caaacactgtatattcctcctgatgcgtggagaaaaatgtccgcttctcagaagcagtac
tgggatgtcaaatgtaaatacattgacattgtgcttttctttaaagtgggaaaattttat
gagttgtatgagctagatgctgaaattggtcacaaggagcttgattggaaaatgacacta
agtggtgtgggaaaatgtcgacaggttggtatatctgaaagtggaattgatgaagctgtt
cagaagctcctagcgcgagggtacaaagttggacggatggaacagttggaaacatctgag
caagcaaaatctagaggctctacttctgttattcgtagaaaactagttcatgtactcacc
ccttctacagcaagtgagggtaatattgggcctgatgcagttcatcttcttgctgtcaag
gagacttggaatgagctggggaatggttcaatcattattggatttgcttttgtcgactgt
gctgctctgaaagtttgggttggttccttcgacgatgatgcatcttgtgcaggtttgggg
gctttgctgatgcaagtgtcaccgaaggaagttatattcaatgcaaggggtttgtcaaag
gatgctcagaaagcactgaaaaaatattcatcaacaggtcctgcagcaccactcctatct
ccagttcagccaggtgctgagtttgttgatcctgcagaagtaaaaaatttcctcgacttg
aaaggttactttaaaggatcttgtaataagtgggatcacgccgttgatggagagaaccat
gatgttgctttatgtgctcttgggactcttgttaatcatttagagagattgatgttagat
gaggtcttacataatggtgatgttctatcatatgaagtctataagggttgcctcaaaatg
gacggacagacacttgtcaatcttgaaatcttcaacaataatgccgatgggagtccatca
ggtactttatacatgtatcttgataactgtattacatcacctgggaagcgacttttaaga
agatggatttgtcatcccctcaaagatgtagagaaaatcaaccataggcttgatgtggtt
gacagacttgttgaaaattcagacgccacattatccactgctcagtatctttgcaagctt
ccagatttgtgtaggctgcttggacgggtcaaggctagcattcaatcttctgaagcactc
cttctgcccttgattggtgccaaaatattgaagcagcgagtgaaagtgtttgggttgctc
gttaaagggctacggattgggctggacttgttaagattgttgcagaaggaatatctgacc
tcttccctagctaaagttgtatccttgcctgttctagatggtgacaatgggcttgataag
ttcctcacccaatttgaagcagcaattgatagtgacttccccaattttcaggaccataat
gctactgattttgatgctgaaacgctatccattttgatggagttatttattgagaaggct
actgagtggtctcaattcatttatgccataagttgtgttgatgtattaagatcattttcc
attactgcaaaattttcttctggagttatgtgtagaccagtgatcttgcctctttcaaag
ccgtcaaatttctgcaaagaggctggtggaccaacactaaacatcaaaggattgtggcat
ccatatgctcttggcgaaagtggaggacttcatgttcctaacaatctccatcttggaggg
aatgcaaatatccgttatcctcgttctctactgttgaccggaccaaatatgggtggaaag
tcaactcttttacgtgccacttgtctggccgtcataatggctcagttgggttgctatgtg
cctggagaaacatgtgtgctttcacttgtggacatcatctttacacgtcttggagccact
gatcgaatcatgactggtgaaagtaccttctttattgagtgcacggagaccgcatcagtt
cttcaaaatgctacatataattcccttgttcttttggatgaattgggtagaggaacaagc
acttttgatggatatgctattgcatatgctgtattccggcaccttgtagagatggtgaac
tgccgcttactgtttgccacacattatcatccactcactaaagagtttgcttctcatcct
catgtgacattacaacacatggcctgctctttcaagatgaaatctcaaagttcatctcca
acagagcaagaactggtgttcctttaccgcctagcctctggagcatgcccggagagctat
gggatgcaagtagccctcatggctggaatcccgaaaactgtggttgaatctgcatcgagt
gcagggcaagtaatgaagaaaatgaatggggaaagttttaggtcatgtaaacgaagagct
aacttttcaacactgcatgaggaatggttcaggactcttctggaaatctcgaagacggat
ggtggatttaacaatgacaatgacctatttgatacattgttttgtttgtggcatgaactt
aacgctgatagatccacttgctga
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