Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_2029
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Entry
SPC_2029 CDS
T00862
Symbol
yciR
Name
(GenBank) hypothetical protein
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
sei
Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sei00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SPC_2029 (yciR)
Enzymes [BR:
sei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
SPC_2029 (yciR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
GGDEF_2
PAS_4
Motif
Other DBs
NCBI-ProteinID:
ACN46165
UniProt:
C0Q3R0
LinkDB
All DBs
Position
complement(2080028..2082019)
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AA seq
663 aa
AA seq
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MVRMMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELSPEQAGRIREITAI
TSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVAPTQAQELSFAEQIVSEA
NSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSRREAVASRHYIENFFRNG
NAYEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGTDITEERRAQERLRILANTD
TVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFKKINDAYGHMFGDQLLQAVSLAL
LSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRILTRLRQPFRIGLIEVYTGCAIGI
SLAPRHGQDSDSLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWLDTNLRKALEND
QLLIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQIAKWRDKGINLRVAVNFSARQLADQTLFTALKQALYDLNFEYCPIDVELTESCLIEND
TLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPLSQSLV
RAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRYQTK
KMR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggtacgcatgatgaaacagattcaggaacaaacggcgctaaatccccttcactctcac
tggcgtctggctgatgaccgcaacgtgctgtatctctccccgacaggtgaaacggatgca
gaaaaaacggttgagctatcgccggagcaagccgggcgtatccgggaaataacggcgatt
acgtccagtctgctgataacgttgttgatagaaaaacaggttaccgctgtgcacctggta
ggccgtaagattaataaccgtgaatgggctggcagcctggcaacctggcctgatacgcct
gccgtcgcgccaacgcaggcgcaggaactctcttttgccgagcaaatcgtatcagaagca
aactcagtcattgcgatactggatagtcggggaaaaatctgtcgatttaatcggttatgc
gaagagtacacgggcttaaaagagcgagatgtaattggtcaaagcgtctttaaattattt
atgagtcgccgggaggcggttgcctcccggcactacattgagaatttttttcgcaatggc
aatgcctatgaaatcgaacgctggataaagacccgtaaaggccaacgcctgttcttattt
cgtaataaatttgtccataacggtagcggaaaaaacgaaattttcctgatctgcgcaggc
acggatatcaccgaagaaaggcgggctcaggagcgtttacgcatactggcgaatacagac
accgtcaccggcctgcccaatcgcaatgctatccatgaatttattaatcatgctattgcc
tcggctggcgagtcgcaggtgggtatcgtttatctcgatctggataacttcaagaaaatt
aatgacgcctatgggcatatgtttggcgatcagctcttacaggccgtttcgctggcgctg
ttgagttgtctggaggaagatcaattgctggccagactggggggagatgaattcattgtc
ctcgctgcccatacgtctcaggccgcgctggaagcagtagcctcacgaatccttacccgt
ctgcggcaaccgtttcgtattggactcattgaagtttacacgggatgcgccattggcatt
tcgttggccccccggcacggacaggacagcgacagtctcattcgcactgccgacaccgca
atgtataacgccaaagaaggcggccgcggtcagttctgcgttttttcgccggaaatgaat
cagcgcgtatttgactatcactggctggatacaaacctgcgaaaagcgctggaaaacgac
cagttacttattcactatcagcccaaaattacctggcgcggcgaagtacgtagcctggaa
gcgctggtacgctggcaatcgccggaacgcggattaattccgccgctggagttcatctca
tacgccgaagagtcaggactcatcgtcccgctgggccgctgggtgattctggatgtagtt
cgccagattgcgaaatggcgcgataaggggattaacttgcgcgtagccgttaacttttcg
gcgcgacaactggccgaccagacgctttttactgcgcttaaacaggctttgtacgatctg
aattttgagtattgcccgatcgatgtcgagctaacggaaagctgcctgatcgaaaatgac
acgctggcgctatcggttatccagcaatttagtcagctcggcgcccagattcatctggat
gattttggcaccgggtattcttcgctttctcaactcgcccggttccctattgatgccgtt
aaactggatcaggctttcgtcagagatatccataagcaaccgctgtcgcaatctctggtt
cgggcgattgtcgcggtggctcaggcgctaaatttacaagtgattgccgaaggcgtagaa
aatgctaaagaagatgccttcctgacaaaaaacggtgtcaatgaacgacagggcttttta
ttcgctaaacctatgcccgccgtttcttttgaacgctggtacaaacgttatcagacgaaa
aaaatgcgttaa
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