Suncus etruscus (white-toothed pygmy shrew): 125997253
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Entry
125997253 CDS
T09902
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04064
NF-kappa B signaling pathway
setr04514
Cell adhesion molecules
setr04668
TNF signaling pathway
setr04670
Leukocyte transendothelial migration
setr04933
AGE-RAGE signaling pathway in diabetic complications
setr05143
African trypanosomiasis
setr05144
Malaria
setr05417
Lipid and atherosclerosis
setr05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
125997253 (VCAM1)
04668 TNF signaling pathway
125997253 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125997253 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
125997253 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
125997253 (VCAM1)
05143 African trypanosomiasis
125997253 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
125997253 (VCAM1)
05418 Fluid shear stress and atherosclerosis
125997253 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125997253 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
setr04090
]
125997253 (VCAM1)
04091 Lectins [BR:
setr04091
]
125997253 (VCAM1)
CD molecules [BR:
setr04090
]
Proteins
125997253 (VCAM1)
Lectins [BR:
setr04091
]
I-type lectins (Siglecs)
125997253 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
ICAM_N
ICAM1_3_5_D2
Ig_4
Ig_6
Adhes-Ig_like
Ig_5
C1-set
Motif
Other DBs
NCBI-GeneID:
125997253
NCBI-ProteinID:
XP_049621649
EnsemblRapid:
ENSSRTG00000005571
LinkDB
All DBs
Position
19:20238611..20258728
Genome browser
AA seq
738 aa
AA seq
DB search
MPRKMAGIFGASNIFWMVFAASQAFKIEIFPEDKIIAQIGDSVSLTCSTTGCESPSFSWR
TQMDSPLNGKVKNEGTKSILTMDPVSFGNEHSYLCTATCESRKLEKEIQVEIYSFPKEPE
ISLSGPLEVGQPVTVTCSVADVYPFDRLEMTLLKGNQLMKNREFLEEMESKIVETKSLEV
TFTPRKEDIGKNLVCHAKLHIDGIGTELRERETRKKLQLYASPKNTIRIVKPSGKLQEGD
SVTMTCVSEHLPAPQIIWSKKLDNGDVQVLSANASLTLIAMRVEDSGTYICEGIDSHGKH
REEVELIVQEKPFSVEISPGPQIAAQIGDSVTLTCESMGCVSPSFSWRTQMDSPLVGSVK
SEKTKSTLTLNPVSFEHEHSYLCTVTCGRKKMEKGIQVNLYSFPRDPEIELNDPLVTGHP
VTVSCKVQNVYPLDRLELQLLKGQRIMKNKNFLEDEDKKSLETQSLDMSFIPSIEDTGKI
LVCLAKLHIDEMEFEPKQRQSIKTLSVNVPPKEMTILVSPSSILEEGSSVNLTCSSDGFP
APKVLWSKQLNNGNLQPLSENTTVTLTSTRKEDSGIYVCEGFNPAGISRKEVELVVQVPP
KDIQLTAFPSETVKEGDTVIISCTCENIPKTWIILKKKADTGDTVLKSTDGAYTIHKAQL
RDAGVYECESKNEVGLQLRSLTLDVKGKGNKDYFSPELLVLYCASSLIIPAIGMIIYFAR
KANMKGSYSLVEAQKSKV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggaaaatggccgggatttttggagcctcaaatatattttggatggtgtttgca
gcctctcaagcttttaaaattgagattttccctgaagacaaaattattgctcagattggg
gactcagtttcactgacttgcagcacaactggctgcgagtctccatctttctcttggaga
acccagatggacagtccactgaacggaaaagtgaagaatgaagggactaagtccatactt
accatggatcctgtcagctttgggaatgagcactcctacctgtgtacggcaacgtgtgag
tccagaaaactggagaaagaaattcaggtggagatttactctttccctaaggaaccagag
atctctttgagtggcccactggaggttggacagccagtcactgtcacctgttcagttgct
gatgtttacccatttgacagactggagatgactctactgaagggcaaccaactcatgaag
aatcgggaatttctggaagaaatggagtcaaagattgtggaaaccaaaagcttggaagta
acctttacccctagaaaagaggatattggaaaaaatcttgtttgccatgctaaattacac
attgatggaattggtacagagctcagagaaagggagactagaaaaaagttgcaactatat
gcctcacccaagaatacaattagaattgtgaaaccctccggaaagcttcaagaaggtgac
tcagtgacaatgacatgtgtcagcgaacatctaccagctccccaaattatttggagcaag
aaattagataacggtgatgtacaggttctttctgcaaatgcaagtctcactttaattgct
atgagggtagaagattctggaacttatatttgtgaaggaattgattcacatggaaaacac
agagaagaggtggaattaattgtgcaagagaagccatttagcgttgagatctcccctggt
cctcaaattgctgctcagattggagactcggtgacgctgacatgtgaatccatgggttgt
gtgtccccatccttttcttggaggactcaaatggacagtccactggtcgggtcagtaaag
agtgaaaagaccaagtccacattgactctgaaccctgtgagttttgagcatgagcattct
tacctgtgcaccgtgacatgtggacgtaagaaaatggaaaaaggaatccaggtgaacctc
tactcattccctagagatccagaaattgaactgaatgatccactagtgactggtcatcca
gtcactgtcagctgcaaggttcagaatgtatatcctttggatcggctagagcttcaactc
ctgaaggggcagagaattatgaaaaataagaacttcttagaggatgaggataagaaatcc
ttagagactcagagtttggatatgagcttcattccttccatagaagatactggaaaaatt
cttgtttgtctggctaagttacatattgatgaaatggaatttgaacccaaacaaaggcag
agtataaaaacactttctgttaatgttccccccaaggagatgaccatcttggtgagtcct
tcctccatcttggaggaaggtagttctgtgaatctgacatgctcaagtgatggatttcca
gctccaaaagtcctatggagcaagcagctaaacaatggaaatctacagcctctttcagag
aatacaactgtcaccttgacttctacaagaaaggaagattctggcatttatgtgtgtgaa
gggtttaacccagctggaataagcagaaaagaagtagaattagttgtccaagttcctcca
aaggacatacaactgacagctttcccttctgagacagtcaaggaaggagacacagtaatt
atatcttgtacatgtgaaaatattcccaaaacttggataattctgaagaaaaaagctgat
acaggagatacagtgctaaagtctacagatggtgcatataccatccacaaggcccagtta
agggatgcaggagtatatgaatgtgaatctaaaaatgaggttggcttgcaactaagaagt
ctaacacttgatgttaaaggaaaaggaaacaaggactacttttctcctgaacttcttgta
ctctactgtgcatcctcattaataatacctgccattggaatgatcatttactttgcaaga
aaggctaacatgaaagggtcctatagtcttgtagaagcacagaaatccaaggtatag
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