Suncus etruscus (white-toothed pygmy shrew): 126027525
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Entry
126027525 CDS
T09902
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03030
DNA replication
setr03410
Base excision repair
setr03420
Nucleotide excision repair
setr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126027525 (LIG1)
03410 Base excision repair
126027525 (LIG1)
03420 Nucleotide excision repair
126027525 (LIG1)
03430 Mismatch repair
126027525 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
setr03032
]
126027525 (LIG1)
03400 DNA repair and recombination proteins [BR:
setr03400
]
126027525 (LIG1)
Enzymes [BR:
setr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126027525 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
126027525 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
126027525 (LIG1)
DNA replication proteins [BR:
setr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
126027525 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
126027525 (LIG1)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
126027525 (LIG1)
NER (nucleotide excision repair)
Other NER factors
126027525 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
126027525 (LIG1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
126027525
NCBI-ProteinID:
XP_049642473
EnsemblRapid:
ENSSRTG00000030115
LinkDB
All DBs
Position
14:complement(91765238..91780189)
Genome browser
AA seq
843 aa
AA seq
DB search
MQRSIMSFFQPKKEDKGKKPEKEVTREVESPSRTLKKRNGVALEGDSPVKRPARKATRVL
GSEGEEDDDALSPPGGQASAPGSPPPSPPSPEADVPSSPSLPASSPVDISLSGIPKRRTE
VESRASEPEVAKEPQKDAQILLSPTAPKTLSSFFAPRKPAAKKDVEEKASGTSGKDGVKS
PPDPDSYDPGKGAYHPVDDACWKPGQRVPYQAVARTFQKIEEVSARLRMVETLSNLLRSV
VALSPSDLLPILYLSLNRLGPPQQGLELGVGDSVLLKAVAQATGRQLESVRAEVAEKGDA
GLVAENSRSTQRLVLPPPPLSAAGVFAKFQDIARLSGTASITKKMEVIKGLFVACRHSEA
RYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGTPPAMVDAGKGKTTEARKTWLEEQ
AMVLKRTFCEVPDLDRIVPVLLEHGLEKLPEHCRLSPGTPLKPMLAHPTRGVHEVLKRFE
EASFTCEYKYDGQRAQIHVLESGEVKIFSRNQEDNTGKYPDVISRIPKIKLPSVTSFILD
TEAVAWDREKKQIQPFQVLTTRKRKEVATEEIQVQVCLYAFDLLYLNGQSLVREPLSRRR
QLLRDNFVETEGEFVFATSLDSKDTEQIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRS
HNWLKLKKDYLEGLGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEESEEFQAICKLGTG
FSDEELEAHYQRLQTLLLPTPRSYVRADGAVAPDHWLEPSTVWEVKCADLSLSPVYPAAR
GLVDSEKGVSLRFPRFIRERDDKKPEQATTSAQVACLYKKQSQIQNQQNQQGTESDSDRE
DFY
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaacccaagaaagaggataaagggaagaagcca
gagaaagaggtcacccgagaggtggaatccccatccaggaccctgaagaagcggaatgga
gtggcgcttgagggtgactcgcctgtgaagaggcctgctaggaaggcgacccgagtacta
ggcagcgaaggggaggaggatgacgatgccctctcacctccaggtggacaggcatctgcc
ccgggctccccaccaccctctccacccagtcctgaagctgatgtgcccagtagcccctct
ctacctgcgtcatctcctgtggacatctccctgtcagggataccgaagcgtcgcacagaa
gttgagtcccgagcctcagagcctgaagtggccaaggaacctcagaaagacgcccagatc
ctgctgtcccccacagctcccaagaccctcagcagcttttttgcccctcggaaaccagca
gccaaaaaggacgtggaagagaaggcatcggggacttctggaaaggatggggtaaagagc
cccccagatccagatagctacgaccctggcaagggtgcctatcaccctgtggatgatgcc
tgctggaagcctggccagagggtcccttaccaggctgtggctcgaaccttccagaagatt
gaggaggtttctgctcggctccgcatggtggagacactgagtaacctgctccgctccgtg
gtggccttgtcgccttccgacctcctgcccattctctacctcagcctcaaccgcctgggg
ccgccgcagcagggcctggagctgggcgtgggggacagtgtcctgctcaaggccgtggcc
caggccacagggcggcagctggagtcagtgcgggctgaggtggccgagaagggggacgca
gggctggtggctgagaacagccgcagcacccagcgccttgtgctgcccccaccacctctc
agcgccgctggcgtctttgccaagttccaggacatcgcccggctctcaggcacggcgtcc
atcaccaagaagatggaggtcatcaaaggcctctttgtcgcctgccgccactcagaagcc
cgctacatcgccagagccctgagcgggcggctgcgcctcgggctggcagaacagtcagtg
ctggccgcgctggcccaggctgtgagcctcacacccccaggacaaggaacaccccctgcc
atggtggatgctggaaagggcaagaccacagaggccaggaagacatggctggaggagcaa
gccatggtcctcaagagaaccttctgcgaggtgcccgacctggaccgcatcgtcccagtg
ctcctggagcatggcctggagaagctcccagagcactgcaggctgagcccagggacaccc
ttgaaacccatgctggcgcaccccacgaggggcgtccatgaggtcctgaagcgctttgag
gaggcatcttttacctgcgagtataagtacgatggacagagggcacagatccacgtactg
gaaagtggggaggtaaagatcttcagtcgaaaccaagaggacaacacagggaagtaccca
gacgtcatcagccgcatccccaagatcaagctcccttcagtcacatccttcatcctggac
actgaggccgtggcttgggatcgggaaaagaagcagatccagccgttccaggtgctcacc
acccgcaagcgcaaggaggtggccacggaggagattcaggtgcaggtgtgtctgtacgct
ttcgacctcctctacctcaacggacagtccctggtccgggagcccctgtctcggcggcgc
cagctgctccgcgacaacttcgtggagaccgagggcgagttcgtctttgccacgtcgctc
gactccaaggacacggagcagatcgctgagttcctggagcagtcggtgagagactcctgc
gaggggctgatggtgaaaaccctggacgtcgacgccacatatgagatcgccaagcgctcg
cacaactggctcaagctgaagaaggactatctggagggcctgggcgacaccctggacctc
gtggtgatcggcgcctacctgggccggggcaagcgtgctggtcgctacggcggcttcctg
ttggcggccttcgatgaggagagcgaagagttccaggccatctgtaagcttggaactggc
ttcagcgatgaggagctggaggcgcattaccagcgattacagacgctgctgctgcctaca
ccccgttcctacgtgcgggcggatggcgccgtggcccctgaccactggctggagccaagc
accgtgtgggaggtgaaatgtgccgacctctccctgtcacccgtctacccggcggctcgt
ggcctggtggacagtgagaagggggtatccctccgcttcccccgcttcatccgcgagcgg
gatgacaagaagccggagcaggcgaccaccagtgcccaggtggcctgtctctacaagaag
cagagtcagatccagaaccagcagaaccagcaaggcaccgagtctgactcagacagggaa
gatttctactag
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