KEGG   Suncus etruscus (white-toothed pygmy shrew): 126027525
Entry
126027525         CDS       T09902                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03030  DNA replication
setr03410  Base excision repair
setr03420  Nucleotide excision repair
setr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126027525 (LIG1)
   03410 Base excision repair
    126027525 (LIG1)
   03420 Nucleotide excision repair
    126027525 (LIG1)
   03430 Mismatch repair
    126027525 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:setr03032]
    126027525 (LIG1)
   03400 DNA repair and recombination proteins [BR:setr03400]
    126027525 (LIG1)
Enzymes [BR:setr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     126027525 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     126027525 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     126027525 (LIG1)
DNA replication proteins [BR:setr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    126027525 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     126027525 (LIG1)
DNA repair and recombination proteins [BR:setr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     126027525 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     126027525 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     126027525 (LIG1)
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR DDR
Other DBs
NCBI-GeneID: 126027525
NCBI-ProteinID: XP_049642473
EnsemblRapid: ENSSRTG00000030115
LinkDB
Position
14:complement(91765238..91780189)
AA seq 843 aa
MQRSIMSFFQPKKEDKGKKPEKEVTREVESPSRTLKKRNGVALEGDSPVKRPARKATRVL
GSEGEEDDDALSPPGGQASAPGSPPPSPPSPEADVPSSPSLPASSPVDISLSGIPKRRTE
VESRASEPEVAKEPQKDAQILLSPTAPKTLSSFFAPRKPAAKKDVEEKASGTSGKDGVKS
PPDPDSYDPGKGAYHPVDDACWKPGQRVPYQAVARTFQKIEEVSARLRMVETLSNLLRSV
VALSPSDLLPILYLSLNRLGPPQQGLELGVGDSVLLKAVAQATGRQLESVRAEVAEKGDA
GLVAENSRSTQRLVLPPPPLSAAGVFAKFQDIARLSGTASITKKMEVIKGLFVACRHSEA
RYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGTPPAMVDAGKGKTTEARKTWLEEQ
AMVLKRTFCEVPDLDRIVPVLLEHGLEKLPEHCRLSPGTPLKPMLAHPTRGVHEVLKRFE
EASFTCEYKYDGQRAQIHVLESGEVKIFSRNQEDNTGKYPDVISRIPKIKLPSVTSFILD
TEAVAWDREKKQIQPFQVLTTRKRKEVATEEIQVQVCLYAFDLLYLNGQSLVREPLSRRR
QLLRDNFVETEGEFVFATSLDSKDTEQIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRS
HNWLKLKKDYLEGLGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEESEEFQAICKLGTG
FSDEELEAHYQRLQTLLLPTPRSYVRADGAVAPDHWLEPSTVWEVKCADLSLSPVYPAAR
GLVDSEKGVSLRFPRFIRERDDKKPEQATTSAQVACLYKKQSQIQNQQNQQGTESDSDRE
DFY
NT seq 2532 nt   +upstreamnt  +downstreamnt
atgcagcggagtatcatgtcatttttccaacccaagaaagaggataaagggaagaagcca
gagaaagaggtcacccgagaggtggaatccccatccaggaccctgaagaagcggaatgga
gtggcgcttgagggtgactcgcctgtgaagaggcctgctaggaaggcgacccgagtacta
ggcagcgaaggggaggaggatgacgatgccctctcacctccaggtggacaggcatctgcc
ccgggctccccaccaccctctccacccagtcctgaagctgatgtgcccagtagcccctct
ctacctgcgtcatctcctgtggacatctccctgtcagggataccgaagcgtcgcacagaa
gttgagtcccgagcctcagagcctgaagtggccaaggaacctcagaaagacgcccagatc
ctgctgtcccccacagctcccaagaccctcagcagcttttttgcccctcggaaaccagca
gccaaaaaggacgtggaagagaaggcatcggggacttctggaaaggatggggtaaagagc
cccccagatccagatagctacgaccctggcaagggtgcctatcaccctgtggatgatgcc
tgctggaagcctggccagagggtcccttaccaggctgtggctcgaaccttccagaagatt
gaggaggtttctgctcggctccgcatggtggagacactgagtaacctgctccgctccgtg
gtggccttgtcgccttccgacctcctgcccattctctacctcagcctcaaccgcctgggg
ccgccgcagcagggcctggagctgggcgtgggggacagtgtcctgctcaaggccgtggcc
caggccacagggcggcagctggagtcagtgcgggctgaggtggccgagaagggggacgca
gggctggtggctgagaacagccgcagcacccagcgccttgtgctgcccccaccacctctc
agcgccgctggcgtctttgccaagttccaggacatcgcccggctctcaggcacggcgtcc
atcaccaagaagatggaggtcatcaaaggcctctttgtcgcctgccgccactcagaagcc
cgctacatcgccagagccctgagcgggcggctgcgcctcgggctggcagaacagtcagtg
ctggccgcgctggcccaggctgtgagcctcacacccccaggacaaggaacaccccctgcc
atggtggatgctggaaagggcaagaccacagaggccaggaagacatggctggaggagcaa
gccatggtcctcaagagaaccttctgcgaggtgcccgacctggaccgcatcgtcccagtg
ctcctggagcatggcctggagaagctcccagagcactgcaggctgagcccagggacaccc
ttgaaacccatgctggcgcaccccacgaggggcgtccatgaggtcctgaagcgctttgag
gaggcatcttttacctgcgagtataagtacgatggacagagggcacagatccacgtactg
gaaagtggggaggtaaagatcttcagtcgaaaccaagaggacaacacagggaagtaccca
gacgtcatcagccgcatccccaagatcaagctcccttcagtcacatccttcatcctggac
actgaggccgtggcttgggatcgggaaaagaagcagatccagccgttccaggtgctcacc
acccgcaagcgcaaggaggtggccacggaggagattcaggtgcaggtgtgtctgtacgct
ttcgacctcctctacctcaacggacagtccctggtccgggagcccctgtctcggcggcgc
cagctgctccgcgacaacttcgtggagaccgagggcgagttcgtctttgccacgtcgctc
gactccaaggacacggagcagatcgctgagttcctggagcagtcggtgagagactcctgc
gaggggctgatggtgaaaaccctggacgtcgacgccacatatgagatcgccaagcgctcg
cacaactggctcaagctgaagaaggactatctggagggcctgggcgacaccctggacctc
gtggtgatcggcgcctacctgggccggggcaagcgtgctggtcgctacggcggcttcctg
ttggcggccttcgatgaggagagcgaagagttccaggccatctgtaagcttggaactggc
ttcagcgatgaggagctggaggcgcattaccagcgattacagacgctgctgctgcctaca
ccccgttcctacgtgcgggcggatggcgccgtggcccctgaccactggctggagccaagc
accgtgtgggaggtgaaatgtgccgacctctccctgtcacccgtctacccggcggctcgt
ggcctggtggacagtgagaagggggtatccctccgcttcccccgcttcatccgcgagcgg
gatgacaagaagccggagcaggcgaccaccagtgcccaggtggcctgtctctacaagaag
cagagtcagatccagaaccagcagaaccagcaaggcaccgagtctgactcagacagggaa
gatttctactag

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