Scleropages formosus (Asian bonytongue): 108921099
Help
Entry
108921099 CDS
T04919
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108921099 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108921099 (polr1a)
Enzymes [BR:
sfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108921099 (polr1a)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108921099 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
Motif
Other DBs
NCBI-GeneID:
108921099
NCBI-ProteinID:
XP_018585911
UniProt:
A0A8C9SD73
LinkDB
All DBs
Position
1:52418319..52445124
Genome browser
AA seq
1702 aa
AA seq
DB search
MLFGKDVPWRRLEGISFGMYTAAEIRKLSVKTVTNSRFLDNVGNPAANGLYDLSLGPADS
KEVCATCLQDFNSCPGHLGHIELPLPVYNPLFFDKLYLLVRGSCVSCRTLTCPRSAVHLL
LQQLRVLEKGELQAVYELEAELNRFLDSNVQASGVEIQEVLEQHAAEILRRHQDESCTFP
VKRICECRRKLVTNFWRTHMTSSRCPNCKAGRSQVRKEHNSKLIVTLPASLAKDAVRENS
DAQLQSHVLDESLLGRRGYLTPTMAKEHVTQVWKNEGFFLKHLFSGLDVCDSGSDFSHEM
FFLDLMVVPPSRYRPINRLGDQMFTNGQTVNMQAVMKDSAVIQKLLALMAGEKAQQLEEA
EESESRQTDQAFLVGIPGQTLTDKLYNMWIRLQSHVNIVFDSDMDKLMTEKFPGVRQILE
KKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQ
AVMNGPSVHPGASMVINEDGSRTILSASNYTQREAIAKQLLTPCTGPHRMPTKIVNRHIK
NGDVLLLNRQPTLHRPSIQAHRARILPAEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL
GRAEAYTLVSTTQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFSREQYMELVYRGLTD
KKGRVKLLPPAVLKPQPLWTGKQVVSTLLLNVIPENHIPLNLTGKAKIPSKVWVKDVPRA
VPGYELDNMCESQVVIRHGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSANLLSCLAR
LFTAYLQLYRGFTMGVEDILVKPGADKRRKKLIAESTRCGAKALREAFGLPPTAGESEAR
DRWQDAHLSPDQRDVNMVDLKFKEEVNLINNGINKVCMPLGLHQRFPENNLQLMVQSGAK
GSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDVSPRSGGFVSGRFLTGIKPPE
FFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDG
LDIPKTQFLQRRQFPFIKDNYEVIRESKCLDEILSRMSADAAEAHLRATRRWKAKRGLAA
PREGAFLLFSQKKLPKLKSASCRNDLQGGRDAATRQVLERWQSLDDSSRRKYVKKARRCP
DTCVSVFRPDVCFGSVSETFDDIVESYLSECHSQLGLTGQAEDHVTDRLKPLLQLKWQRA
LCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASANIKTPM
MSIPVLNSKKAMKRVKALRKKLTRVCLAEVLHKAEVEETLRVEGRQKVNRIIKITFHFLP
PELYRQDKQLSAQQILRYIETRFIQQLLVAIKKRGDKLSSLNVVEARKATRKDSDQDVGG
APGTQENEEAEVEDGGNIVDGEADEGDADATDAKRRQKQEEEVDYESEDGEDDVDDEEDL
TEEKEETPLEEEQEESSQTPPLSGPPLTPSAEQGPSEDQDPQRVNGVLGLSPAVQNYTYD
SQHGLWCEVTLALPISKVRVDLTSLVVSQAQSAVVHEVKGISRCLLNEVTNRRGEKELML
NTEGINLQEILKYSDILDLNRLYSNEVHAMANMYGIEVALRVIEKEIKDVFAVYGIEVDP
RHLSLVADYMCFEGVYKPLNRFAIESNSSPLQQMTFETSYKFLKDATMMGSHDKLCSPSA
CLVVGKVVKGGTGLFDLKQPLQ
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcggcaaagacgtaccatggaggagactggagggcatctcgttcggaatgtac
accgccgcggaaattaggaagctgagcgtaaagaccgtcacgaactcgaggttcctggac
aacgtgggcaaccctgccgctaacggtctgtacgacctgtcgctcggcccggcggactct
aaagaagtgtgtgccacctgcctgcaggacttcaacagctgtcccgggcacctgggccac
atcgagctgccgctgcccgtctacaacccgctcttcttcgacaaactctacctgctggtg
cgcggctcctgcgtgagctgccgcacgctcacctgcccgcgctccgccgtccacctcctg
ctgcagcagctcagggtcctggagaagggggagctgcaggccgtctacgagctggaagcg
gaactcaacaggttcctggattcgaatgttcaggccagcggtgttgagatccaggaggtc
ctcgagcagcacgcggccgagattctccggagacatcaagatgagagctgcactttcccc
gtgaagcgaatctgcgaatgcagaaggaagctggtcaccaacttctggaggactcacatg
acttcttcacgatgcccaaactgcaaggcgggccggtcgcaggtgcgaaaggagcacaac
agcaaactgatcgtcactctgcctgcgtcactcgctaaagacgccgtgagggagaacagc
gacgctcagctgcagtcccatgtacttgatgagtcactgcttggcaggaggggatacctg
acacccacaatggccaaagagcacgtgacccaagtgtggaagaatgaaggctttttcctg
aagcacctcttctcaggcctggatgtgtgtgactccggtagcgacttcagccatgaaatg
ttcttcttagacctgatggtggtccctccgtccaggtatcgacccataaaccgtctcggt
gaccagatgttcaccaacggtcagacggtgaacatgcaggcggtcatgaaggacagcgcg
gtcattcagaagctgctggccctcatggcgggtgagaaggcacagcagttggaggaggcc
gaggagtcggagtctcgccagactgatcaggccttcctggtgggaattcctggtcagacc
ctcacagacaagctgtacaacatgtggatccgactgcagagtcacgtcaacatcgtgttt
gacagtgacatggacaagctgatgactgagaagttcccaggagttcgccagatcttggaa
aagaaggaaggtcttttccggaagcatatgatgggaaagcgtgtggactatgcagcccgc
tccgtcatctgtccggacatgtacattggaaccaatgagattggaataccgatggtcttt
gccaccaaactgacatacccccaacccgtcacaccatggaatgtgaaggagctccgacag
gcggtgatgaatggtcccagcgtccacccgggggcatccatggtcatcaatgaggatggc
tcacgtaccatactcagtgcaagcaactatacacagcgagaggccattgccaagcagctc
ctcacgccctgcaccggcccgcaccgcatgcccacaaagatcgtgaatcgccacattaag
aacggcgacgtgctcctgttgaaccggcagcccacccttcaccggccctcgatccaggct
caccgcgcccgcatcctgcccgccgagaaggtgctgcggctgcactacgccaactgcaag
gcgtacaacgccgactttgacggcgacgagatgaacgcccacttcccccagagcgagctg
ggccgggcagaggcttacaccctggtcagcaccacccagcagtacctggtgcccaaggat
gggaagcctcttgctgggctcatccaggaccacatggtgtcaggtaccagcatgaccatc
cgcggatgcttcttctctcgggagcagtacatggagctcgtttaccgcggtctcactgac
aagaagggcagagtgaagctgctgccaccggctgtgctgaaaccacagccgctgtggaca
gggaagcaggtcgtctccacgttactgttgaacgtcattccggagaaccatatccccctg
aacttgaccgggaaggctaagattcccagcaaagtgtgggtgaaggatgtaccacgggca
gtaccagggtacgagctggacaacatgtgtgagtctcaggtggtcatccggcacggggag
ctgctcgtgggcgttctggacaaggcgcactacgggagctccgcctacggacttgtgcac
tgctgctatgagctgtacggtggcgagacgagcgcaaacctgctcagctgcctggcgcgc
ctctttaccgcgtaccttcagctgtaccgcggtttcaccatgggagtcgaggacatttta
gtaaaacctggcgccgacaagaggaggaagaagctcattgccgaatcaactcggtgtgga
gctaaggccctgcgagaagccttcggccttcctccgacagcaggggaaagcgaggccagg
gatcgctggcaggacgctcacctgagccccgatcagcgggacgtgaacatggtggacctc
aagtttaaggaggaagtgaacctgatcaataacggcatcaacaaggtgtgtatgcccctg
gggctccatcagcgcttcccggaaaacaacctgcagctcatggtacagtctggggccaag
ggctccacggttaacaccatgcagatctcttgcctcttaggccagatcgagctggaggga
agacggcctccgctgatgccatctggaaagtccctgccgtgtttccagccgtacgacgtg
tcgccgcgctcagggggatttgtttccggaagattcctcactgggatcaaacctcctgag
ttctttttccactgcatggctggtcgcgaaggccttgttgacacagccgtgaagacgagt
cgatcgggttacctgcagaggtgtatcataaagcacctggagggcctcgtcgtgcagtac
gacctgactgtgagggacagcgatggaagcgtggtgcagttcctgtacggcgaagacggc
ctggacatcccgaagacgcagttcctgcagcgccgccagttccccttcatcaaggacaac
tacgaggtcatcagggagtcgaagtgtctggatgaaatcttgtcacgtatgagtgccgat
gcggcggaggctcatctgcgggccacgcggaggtggaaggccaagcgagggttggcggcc
ccgagggaaggggccttcctcctcttctcccagaaaaagctgccgaagctgaagtccgcg
agttgccggaacgacctgcagggtggaagagatgcggcgactcgccaggtgcttgaaagg
tggcagtcgctggacgacagcagccggaggaagtatgtgaaaaaggcgcggcgctgcccc
gacacatgcgtctccgtcttccgccccgacgtttgcttcggctccgtgtctgagaccttt
gacgacattgtggagtcgtacctgagcgagtgccacagccaactgggcttgaccggacag
gccgaggaccatgtgacagacaggttgaagcccctgctgcagctcaagtggcagcgagcg
ctttgcgaccctggcgaagccgtggggctcctggctgctcagagcatcggcgagccctcc
acgcagatgaccctcaacacgttccactttgcgggcagaggagagatgaacgtgacgctc
gggattcccagactgagggaaatcctcctgattgcaagcgcaaacatcaagactccgatg
atgagcattcctgtactgaactcaaaaaaggccatgaagagggtgaaagccctgagaaag
aagctgactcgggtctgtcttgcagaggtgctgcacaaggcggaggtggaggagaccctc
agggtggaaggcaggcagaaggtgaaccgcatcatcaagatcacctttcactttttaccc
ccagagctgtacaggcaggacaagcagctctccgctcagcagatactgcgttatatagag
acgaggttcattcagcagctgctcgtcgctataaagaagcgcggcgacaagctgtcgtcc
ttaaatgtcgtcgaggcgcgaaaagccactcggaaggacagcgaccaggatgttgggggc
gctccaggaactcaggagaacgaggaagctgaggtggaggatggaggcaacatcgtggac
ggcgaggcagatgaaggcgatgcagatgccactgacgccaagaggagacaaaagcaggag
gaagaggtcgattacgagagcgaggatggtgaggatgatgttgatgatgaagaggacctc
actgaggagaaggaggaaacaccccttgaggaggagcaggaggagtcctctcaaacccct
ccgctatccggccctccgttaaccccgtccgctgagcagggcccttcggaggaccaggac
ccacagagagtcaacggcgtcctggggctcagccctgctgttcagaattatacgtacgac
agccagcacggcctgtggtgcgaggtgacgctcgctctgcccatcagcaaggtgcgcgtg
gacctgacctcgctggtcgtttctcaagcccagagcgccgtcgtgcacgaggtgaagggg
atctcgcgctgcctgctcaatgaggtcaccaacaggcggggcgagaaggagctcatgctg
aacaccgagggcatcaacctgcaggagatcctcaagtacagcgatattctagacttgaat
cgactgtattccaacgaggtccacgccatggccaacatgtacgggatcgaggttgcgctc
agggtcatcgagaaggagatcaaagatgtctttgctgtctacggcattgaggtggacccc
cggcatctgtctttggtggctgattacatgtgctttgaaggagtatacaagccccttaac
cgctttgccatcgagtccaactcctccccgctgcagcagatgacctttgagacaagctac
aagttcctgaaggatgccactatgatgggttcccatgacaagctctgttctccatccgcc
tgtctggtggtcggcaaggtggtcaaagggggaacgggactctttgacttaaagcagccc
ctccagtag
DBGET
integrated database retrieval system
