Shewanella frigidimarina: Sfri_0466
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Entry
Sfri_0466 CDS
T00395
Name
(GenBank) Porphobilinogen synthase
KO
K01698
porphobilinogen synthase [EC:
4.2.1.24
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00860
Porphyrin metabolism
sfr01100
Metabolic pathways
sfr01110
Biosynthesis of secondary metabolites
sfr01120
Microbial metabolism in diverse environments
sfr01240
Biosynthesis of cofactors
Module
sfr_M00121
Heme biosynthesis, plants and bacteria, glutamate => heme
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
Sfri_0466
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfr04147
]
Sfri_0466
Enzymes [BR:
sfr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.24 porphobilinogen synthase
Sfri_0466
Exosome [BR:
sfr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
Sfri_0466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALAD
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
ABI70328
UniProt:
Q088I7
LinkDB
All DBs
Position
complement(533177..534190)
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AA seq
337 aa
AA seq
DB search
MNIITSAFPQRRMRRMRKHEFSRRLMSENTLTVNDLIYPMFVLEGFQRSEKIASMPGIER
FSVDLLLKEAAELVELGIPLIALFPVTPADKKSLLAEESYNPDGLVQRAVRELKQAFPQL
GIMTDVALDPYTTHGQDGIIDDTGYIMNDITTEILVKQALSHAAAGADIVAPSDMMDGRI
GAIRQALEENGFVNTQIMAYSAKYSSSYYGPFRDAVGSASNLKGGNKHSYQMDPANSDEA
LHEVALDIQEGADMVMVKPGMPYLDIVHRVKTELAVPTFAYQVSGEYAMHMAAIQNGWLA
EKAIVMESLLCFKRAGADGILTYFAKRAAQWLKEQNS
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattattactagtgcctttccacagcgcagaatgcgccgcatgcgtaaacatgaa
tttagccgtcgtttaatgtctgaaaataccttaacagttaacgatctcatttatccgatg
ttcgtgttagaaggttttcaacgctcagaaaaaattgcttcaatgccaggaattgaacgt
ttctcggttgatctattattaaaagaagccgctgaacttgttgaacttggcattccgctt
attgcactatttccagtgacgccagcagataaaaaaagtttacttgcagaagagtcttac
aatcctgatggattagtacaacgtgcagtccgtgaattaaagcaggcatttccacaactt
ggtatcatgacggatgtagctttagatccgtacacgactcatggtcaagacggtattatc
gatgacactggctatatcatgaatgacatcaccaccgagatcctagtcaagcaggcttta
tctcatgccgctgcaggagcagatattgtcgcgccatcagacatgatggatggtcgtatc
ggtgcaatccgccaagcacttgaagaaaatggctttgtgaatactcaaatcatggcttac
tccgctaagtattcatcaagttattacggtccttttcgcgatgctgtcggatcggctagt
aacttaaaaggtggcaataaacacagctaccaaatggatccggctaacagcgacgaagca
ttacacgaagtggcattagatatccaagaaggtgccgacatggtaatggttaaaccaggg
atgccttatttagacattgtacaccgtgtcaaaacagaattagcagtgccaacatttgct
tatcaagtcagcggagagtacgccatgcacatggctgctattcaaaatggttggttggca
gaaaaagccattgtgatggagtcattactttgctttaagcgcgctggagcggacggtatt
ctaacctactttgccaaacgtgctgctcagtggcttaaagagcaaaactcgtaa
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