Shigella flexneri 2457T (serotype 2a): S4109
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Entry
S4109 CDS
T00128
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Pathway
sfx00540
Lipopolysaccharide biosynthesis
sfx01100
Metabolic pathways
sfx01250
Biosynthesis of nucleotide sugars
Module
sfx_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
S4109 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sfx01005
]
S4109 (rfaD)
Enzymes [BR:
sfx01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
S4109 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
sfx01005
]
Core region
S4109 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
KR
adh_short
Motif
Other DBs
NCBI-ProteinID:
AAP19086
UniProt:
Q83PP2
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All DBs
Position
complement(4007826..4008758)
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLIQI
MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY
GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS
MASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRA
ESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT
EYMAWLNRDA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgttaccggcggcgcgggctttatcggcagcaacatcgttaaggccctgaat
gataaaggcatcaccgatattctggtggtggacaacctgaaagacggcaccaagtttgtg
aacctggtggatctggatatcgcggactatatggataaggaagacttcctgatccagatt
atggctggcgaagagttcggtgatgtcgaagcgattttccacgaaggcgcatgctcttcc
accaccgagtgggatggcaagtatatgatggataacaactatcaatactccaaagagctg
ctgcactactgtctggagcgcgaaatcccgttcctgtatgcctcttccgcagccacctac
ggcggacgcacctccgactttattgaatcccgcgagtacgaaaaaccgttgaatgtctac
ggttactcaaaattcctgtttgatgaatatgttcgtcaaatcctgccagaagcgaactcg
cagattgttggcttccgctatttcaacgtttatggaccgcgtgaaggccataaaggcagc
atggcgagcgtcgctttccatctcaacacccagcttaataacggtgaatcaccgaagctg
ttcgaaggtagcgagaacttcaaacgtgacttcgtctatgtgggcgacgtggcagatgta
aacctgtggttcctggaaaatggcgtttccggtatcttcaacctcggcaccggtcgtgca
gaatccttccaggcagtagcagatgctacgctggcttatcacaagaaaggccagatcgaa
tacattccgttcccggataagctgaaaggccgctaccaggcgttcactcaggcagatctg
acaaatctgcgcgcggcgggttacgacaaaccgttcaaaaccgttgctgaaggtgtaacg
gaatacatggcctggctgaatcgcgacgcataa
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