Sinocyclocheilus grahami (golden-line barbel): 107566478
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Entry
107566478 CDS
T04918
Symbol
grin2c
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04020
Calcium signaling pathway
sgh04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
107566478 (grin2c)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107566478 (grin2c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sgh04040
]
107566478 (grin2c)
Ion channels [BR:
sgh04040
]
Ligand-gated channels
Glutamate (ionotropic)
107566478 (grin2c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
107566478
NCBI-ProteinID:
XP_016107428
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MATPQGCWGPSLQLLLFFHLLLNVVPPCRGRPFFGPPSVNVAVVFSGLAHHSEIKGRLSP
ENFLDMPLEVNPITVLVNDTNPRALLTRLCQTMAAESLHGVVFEDDVDSEAVAQILDFIS
SQTSIPIVGISGGSAVVIHHKAEGSTFLQMGASIEQQINAMFKVMEEYNWGNFVVITSLY
PGYETFVDYIRSFTDTSYFLWELQDVLSFEMSVGANDIRTRRLLQQVDSQVYLVYCSHEE
AQYLFRMASDVGLLGPGYIWVIPSLAVGNPEVSPPDSFPVGVISIITDRWRKTLRQRVRE
GVAVIVKGVHSFHKNRGFIPEGHSDCNSPVKSYANNSLFRHMLNVSWEHKDLSFNADGYL
TNPSMVVIALDRERHWDKVGSYEEGILQMRYPVWPRYGSFLEPVSDNRHLTVATLEERPF
VIVESVDPVTGTCVRNTVPCRRQSNKTESITGHTEPYTKLCCKGFCIDILKKLSRTIKFS
YDLYLVTNGKHGKMVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGIS
VMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAKAP
GGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI
QEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKYNQKGVE
EALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRP
IDLALLQYLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLV
FAWEHLLYWKLRHSVRKSDHLDFLLAISRGIYSCFNGVEDIGRSTSIQNPDITANYAQAN
MLKMLQTAKDIVSSAKVENSLDNATKTIENWSRHSGSLPARIPLVTTTEKVPGPFSYITN
VTENHIPHMQRSITPPLLQHTKITIPPPMVNHRVLTRPTPLRYTLPARTRGLYDGMLPVS
SLSTPHLAMHDPPSDLAHPGSSFVPYRDIYTEHHKPCHSDFSDAVRRKKRPQNLLVESMD
LRGLHDYKNQSTCHNEANSFAENHLSSSFSENPFAAADTACNSCVKTYFDPTFDDIPLIG
KMKLHRRPSFLKATWGPDRVRFPGDRSTATASPQVTIPDLFPCVDVHGRVKNTLCYAQPM
DHNYLHAFQRNSRKSQKLRHSQSTRLPSYKEAIFHNVAAVRRASSLVHRPYSYPELPVYQ
SPLSFGPAELCNIFPSMGHPSDSVYGGYRAPTHLQNDHLVPIPGSRVVHSRPIVPMTWGR
ISSLESEV
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggccactcctcaagggtgttggggtccctctctccaactcctcctcttctttcatctg
ttactcaatgtagtgcctccctgccggggacgtccattcttcggccctccttcggtcaac
gtggctgtggttttcagtggtttggcccaccacagtgagatcaagggccgactgagtcca
gaaaacttcctagacatgcccctggaagtgaaccccatcaccgtgctagtgaatgacacc
aaccccagggctttactcacacgtctctgtcagactatggcagcagagagcctccacgga
gtggtgtttgaagatgacgtggactcagaagctgtggcacaaatcttagactttatctcc
tctcagacgtccatccccatcgtaggcatcagtggaggttctgcagtagtcatccaccat
aaggctgaaggctctacctttctccagatgggagcttctatagagcagcagataaatgca
atgttcaaagtgatggaggagtacaactggggtaactttgtagttatcaccagcttgtat
cctggctatgagaccttcgtggactacatccgctccttcacagacaccagctacttcctg
tgggagctacaggatgtgctgagctttgagatgtccgtgggggccaatgacatacgcaca
cgaagactactacagcaggtggactcgcaggtatatctagtgtactgttcccacgaggag
gcacagtacttgttcaggatggcctctgatgtggggctgctagggcccggatatatctgg
gtcatccccagtctggctgtggggaaccctgaagtgtctcctcctgacagtttcccagtg
ggcgtcatcagtattatcacagaccgctggaggaaaacactgcgccagagggttcgggaa
ggagtcgcagtcatagtaaaaggggtgcacagctttcataagaacagaggattcattccc
gagggtcacagtgactgcaatagtcctgtcaaatcatacgccaacaattctctcttcagg
catatgctgaatgtgtcatgggagcataaggacctatccttcaatgctgatggctatctc
accaatccttccatggtggtcattgctttggatcgagagagacactgggacaaggtagga
agctacgaggaagggattctgcagatgcgataccctgtatggccccgttacggcagcttc
ctagagcccgtgtctgacaaccgccacctgactgtggccacgctggaggagaggcctttt
gtcatcgtggagagtgttgatcctgtcacaggcacttgtgtgcgcaatactgtgccgtgt
cgtcggcagtccaacaagactgaaagtataacaggtcacactgagccttacaccaaactc
tgctgcaaaggtttctgcatagacatcctaaagaagctctcacgcaccatcaagttttca
tacgacctttatctggtcacaaatgggaaacatggcaagatggtccgtggcatctggaat
gggatgattggagaggtcttctacaagcgtgcagatatggcaattggctcacttaccatc
aatgaggagcggtcagagattgttgacttttcagtgccgtttgtggagactgggattagt
gttatggtggccagaagcaatggaacagtctcaccttctgccttcctggagccttacagt
ccagctgtgtgggttatgatgttcgtaatgtgcctgactgttgtggcagtcaccgtgttc
gtgttcgagtacttcagccctgttggctacaaccggagccttgtcagtgccaaagcccct
gggggtccaaccttcaccattgggaagtctgtttggctcctgtggggaatcgtcttcaac
aactctgttcctattgaaaaccccaaaggcacgaccagcaaaattatggtcctggtctgg
gctttttttgctgtcatcttcctcgccagctacacagccaatttagctgccttcatgatc
caagagcagtacattgacactgtgtctggacttagtgacaaaaagtttcaaaaaccccag
gaacattatcctccttttcgctttgggacggtcccaaacggcagcacagagaggaacatt
cgaagcaattaccctgacatgcacacccacatgataaaatacaaccagaagggagtggaa
gaagctctcaacagccttaagacagggaagttggacgccttcatatatgatgcagcagtt
cttaattatatggctggcaaggatgagggctgcaagctggtcaccattggtagtgggaag
gtgtttgctaccacaggctacggcattgctctgcagaaggactcccgctggaagcgcccc
atagacctggctctcctccagtacttgggagatggggacacacagagactggagaccgta
tggctgtctggaatatgccagaatgagaaaaacgaggtcatgagctccaaactagacata
gacaacatggcaggtgttttctacatgttgctcgtggccatgggcctcagcctgctggtc
tttgcttgggaacatttactttactggaaactgaggcactctgtccgcaagtctgatcac
ttagacttcctgctggccattagcaggggcatatacagctgctttaatggcgtcgaagat
attggcagatctaccagcatacagaatccagatatcacagccaattacgcccaggccaac
atgctgaaaatgctgcagacagccaaggacattgtctcctcagccaaagtggaaaactca
ttggacaatgccaccaagaccattgagaactggagtcgacacagcggcagcctgccagca
cgtatcccattggtgaccacaactgaaaaagttcctggtcccttctcttacattactaat
gtcacggagaaccacatacctcacatgcagcgttccataactccacctttattgcaacac
actaaaatcactattccaccaccaatggtaaaccacagagttttaacacggcccactcca
cttcgctacacgcttcccgccaggactaggggtctctatgacggtatgcttcctgtatcc
agtctgagcacacctcatctagccatgcatgatcctccatccgacctggcccatcctggt
tcttcctttgtcccatatagagacatctacaccgaacaccacaagccttgtcacagcgat
ttctcagatgccgtcaggcggaaaaagagaccccagaatctcttggtggagtccatggat
ctgagggggcttcacgattataaaaaccaatcaacatgtcataacgaagcaaacagtttt
gctgaaaaccacctgtcctcatcctttagcgaaaatccttttgcagccgcagacacagct
tgtaattcctgcgtcaaaacgtactttgaccccacatttgatgatatacctctgataggg
aaaatgaagcttcatcgcagaccttcattcctgaaagccacttggggtcccgacagagtt
cggttcccaggtgacagatccactgccacagcctccccacaagtaactatacccgacctg
ttcccttgcgtggacgtacacggacgggtgaagaacaccctgtgttacgcccaaccgatg
gatcacaactaccttcacgccttccagcgaaactccaggaaaagtcagaagctcagacac
agccagtccacaaggcttccctcctacaaagaagcaattttccacaacgtggcagctgtc
agaagggcatccagtttggtacatagaccctactcctacccagagctgccagtctaccag
agcccactgtcatttggacctgctgaattatgcaacatcttcccaagcatgggacatccc
agtgacagtgtatatggagggtatagggcacccacacacctacagaatgaccatctagtg
cctattccaggcagcagggtggttcatagcagacctattgtgcccatgacatggggcaga
atttccagtctggaatcagaggtttga
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