Sinocyclocheilus grahami (golden-line barbel): 107584383
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Entry
107584383 CDS
T04918
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03020
RNA polymerase
sgh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107584383
09124 Replication and repair
03420 Nucleotide excision repair
107584383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgh03021
]
107584383
03400 DNA repair and recombination proteins [BR:
sgh03400
]
107584383
Enzymes [BR:
sgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107584383
Transcription machinery [BR:
sgh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107584383
DNA repair and recombination proteins [BR:
sgh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107584383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107584383
NCBI-ProteinID:
XP_016126458
LinkDB
All DBs
Position
Unknown
AA seq
2007 aa
AA seq
DB search
MNSTRCRNTHKQRSSHVMETRRFDLGKGGSIRDNPRSYGQFPKVVLELGLKCIEDNLCSR
KQTKSNVYLEKKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTE
CPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQPRKR
LTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHGGCGRYQPRIRRSGLELYA
EWKHVNEDSQEKKILLNPERVHEIFKRISDEEDMILGMDPKYARPEWMIVTVLPVPPLAV
RPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDN
ELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGV
PRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHL
QIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDE
MNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEV
MNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPYKH
ISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWL
LIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQ
VNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPF
GFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYI
QRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKF
KFDYTNDRALRRTLQEDVVKDLMTNAHVQSTLEREFEKMKEDREILRAIFPTGDSKVVLP
CNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVHELSKKLVIVNGEDQLSRQAQENATLL
FNIHLRSTLCSKRMTEEFRLSTEAFEWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPAT
QMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCR
LEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKH
MTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMD
DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEEGEFKALQEWILETDG
VSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL
LCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIML
GQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPW
NTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPASP
YIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYSPTSPNYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNFTPTSPS
YSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS
SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTY
SPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYS
PTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaacacgatgcaggaacacacacaaacagaggagcagtcacgtcatggagacc
aggagattcgacttgggaaaaggaggcagcatcagagataatccaaggagttatggacag
tttcccaaggtggtgctggagctcggtttgaaatgcatagaagacaacctttgctcacgt
aaacagacaaaaagcaatgtgtacttggaaaagaaacggctgtccgttactgaagggggc
atcaagtaccccgagaccacagaaggaggacgccctaaactggggggacttatggacccc
cggcaaggggtaattgagaggtcaggcagatgccagacgtgtgcaggtaacatgactgag
tgccctggtcattttggtcacattgagctggctaagccagtctttcatgttggctttatc
acaaagatcatgaaggtcctccgatgtgtctgcttcttctgttcaaaactgcttgtggac
gcgaacaatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccacgtaagcgt
ctgacccacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatg
gacaacaagtttggtgtggagcagcaggagactgaagaagacctcaccaaagagaagggt
catggaggctgtggcaggtaccagccacgtatccgtcgctctggtctggagctgtatgct
gagtggaagcacgtgaatgaagactcacaggagaagaagattcttctcaaccctgaacgt
gtgcatgagatcttcaaacgcatttcggatgaagaggacatgatcttgggcatggacccc
aaatacgcccgtcctgagtggatgattgtcactgtgttgcccgtgcctcctcttgctgtg
agaccggctgtggttatgcagggctctgctagaaaccaggatgatttaacacacaagttg
gctgacattgtaaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagcg
catgttatagcagaggatgtcaagctgcttcagttccacgtggccacaatggtagacaat
gaactgccaggtctacctagggcaatgcaaaagtctggtcgtccactaaaatccatcaag
cagaggctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagat
ttctccgcccgaactgtcatcacgccagaccccaacctacagatcgaccaggtgggcgtt
ccccgttccatcgccgcaaacatgaccttccctgagattgtcacaccctttaacattgac
agactccaagagcttgtgaggagaggtaacagtcagtaccctggagccaaatatatcatc
cgagacaatggggacagaattgacctgcgattccaccctaaaccaagtgaccttcacctt
cagattggatacaaagttgaacgacacatgtgtgatggagacattattgtgttcaacaga
cagcctacgctgcacaaaatgtctatgatgggccacagagtgcgaatcttgccttggtca
acatttcgactcaacctcagtgtgacaaccccatacaatgccgactttgacggcgatgag
atgaacctgcacttgccacagtccctggagacccgtgctgagatccaagagctggctatg
gtgcctcgaatgattgttacaccacagtccaacagacccgtcatgggtattgtgcaggac
acactgacagctgtgcgcaagttcaccaagagagatgtcttcttggagaggggtgaggtg
atgaacctcctcatgtttctctccacatgggatggcaaagtgccccaaccggctatcttg
aagccgcgacctctctggactggcaaacagatcttcagcttgatcatccctgggcacatt
aatgccatccgcacacacagcactcaccctgatgaagaggacagcggcccttacaaacac
atctcccctggagacactaaggtgattgtggagaacggtgagctgatcatggggatcctg
tgtaagaagtcattgggaacctcagctggctctcttgtccatatctcataccttgagatg
ggccatgacatcacacgactcttctattctaacatccagactgtcgtcaacaactggctg
ctcattgagggtcactctattggtattggagactccattgccgataaggcaacatatcag
gacattcagaacacgattaagaaagccaaacaggatgtgatagaggtcattgagaaagcc
cacaacaatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccag
gtcaaccgcattctgaacgatgctcgagacaagactggatcctctgcccagaagtcattg
tctgagtacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaac
atttctcaggttattgctgtggtggggcagcagaacgttgagggtaagcgaatccccttc
ggtttcaagcaccgcactctccctcacttcattaaagatgactatggtccagagagtaga
ggcttcgtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgcc
atgggaggcagagagggtctgattgacacagctgtcaaaactgctgagactggttatatt
cagcgtcgtctgatcaagtcaatggagtctgttatggtaaagtatgatgctacagtcaga
aactccattaaccaagttgtccagctgaggtatggagaggatggtctggcaggagaggct
gtggagttccaaaacatggctacccttaagccatcccacaaagcctttgagaagaagttc
aagtttgactacaccaatgaccgagctcttcgccgcactctacaggaagatgtggtgaaa
gatctgatgaccaatgcccatgtccagagtactctagagagagagtttgagaagatgaag
gaagaccgtgagatcttgagggccattttccccacaggcgacagcaaggtggtacttccg
tgcaatttggccagaatgatctggaatgctcagaagattttccgcatcaatcctcgaaca
ccaactgacctcaatccagtacgagtagtggaaggagttcatgagttgagtaagaagctg
gtgattgtaaatggtgaagaccagttaagcaggcaagcccaggagaatgccactctgctg
ttcaacatccacctgcgctccaccctgtgctccaagcgaatgactgaggagttccgtctt
agcacagaggcttttgaatggctgctaggagagatagagaccaaatttaaccagtccatt
gctcaccctggtgagatggtaggtgctcttgctgcccagtctctgggagagcctgctact
cagatgaccctgaacacattccactacgccggtgtgtccgccaaaaacgtcactctcggt
gtgcctagactcaaagagcttatcaacatctccaagcgacccaagaccccctccttgaca
gtctttctcctgggccaagcggcccgtgacgcagagagggccaaagatatcctgtgtcgg
ttggagcacacaaccctgcgcaaggtcactgccaacacagccatttattatgaccccaac
ccgcagaacactgtggtgactgaggatcaggagtgggtcaacgtgtactatgagatgcct
gacttcgacgtgacccgcatttcaccctggctgctgcgtatcgagcttgaccgcaaacac
atgactgaccgtaagctgactatggagcagatcgcagagaagatcaatgcaggatttggt
gatgaccttaactgcatcttcaatgatgacaatgctgagaaactggttttgcgaatccgc
atcatgaatagtgacgagaacaagtttcaagaggatgaagaggtagtggataagatggat
gatgatgtcttccttcgctgcattgaatccaacatgctgacagacatgacactgcaaggc
attgagcagatcagcaaggtgtacatgcatctaccacagactgacaacaagaagaaaatc
atcatcacagaagagggagagtttaaagctttgcaagagtggatcctggaaactgatgga
gtcagcctcatgagggtcctcagtgagaaggatgtggaccctgtcagaaccacctccaat
gacattgtggagatattcactgttcttggtattgaggctgtgcgtaaggctctggaaaga
gagttataccacgtcatctctttcgacggttcttacgttaactaccgccatcttgccttg
ctgtgtgacacaatgacctgcaggggtcacttgatggccatcactcgtcacggtatcaac
aggcaggacactggaccgctaatgaagtgctcttttgaagagactgtggatgtgttgatg
gaagcctcatctcatggtgagtgtgacccaatgaaaggagtgtctgagaatataatgctg
gggcaactggctcctgcaggcactggttgctttgatctgctgttggatgctgagaagtgc
aagtatggtatggagattcccaccaacatccctggtatcagtgttgcaggacccacgggt
atgttctttggctctgcccccagccccatgagtggcatgtctcctgccatgactccctgg
aacactggagccactcctgcatatggtgcttggtctcccagtgttggaagcggaatgaca
ccaggtgctgcaggcttctctcccagcgctgcgtctgatgccagcggcttctcgcctggt
tattctcctgcctggtctcctactcctggttctcctggatcccctggaccagctagccct
tatatcccctcaccaggagccttgtctccaaattactctccaacttctcctgcctacgag
cctcgttctcctggtggatacaccccacagagccctggttactctccaacctctccatca
tactctccgacttcgccatcttattctcccaccagtccaaactacagccccacatctccg
tcctactcgcccacatcaccctcctactctccaacttcgccgtcttattctccaacatct
ccaagctactctccgacttcaccgtcttactctccgacttcaccgtcttactccccgact
tcaccatcctactcgccaacatcccccagctatagcccaacgtcccccagctacagccca
acctcaccgagttacagccccacgtctccttcttattccccaacttctccatcttattcc
ccgacctccccgtcttactctcccacctctccaagctactctccaacctccccgtcctat
tccccaacatctccgagctacagtcccacttcgcccaacttcacacccacctcaccaagt
tactctccgacctctccatcttacagccccacctcaccttcctactcccccacctctccc
aattataccccaaccagtcccaattactcccccacatctccttcttactccccaacttcg
ccgtcctactctccgtccagtccgcgttacaccccgcagtctcccacctacaccccaagc
tcgccttcttacagcccaagttctccatcctactcccccacctccccaaaatacaccccc
acctccccctcctacagtcccagctctcccgaatataccccaacatcccccaaatattcc
cccacttctccaaagtactctcccacttcgcccaaatacagtcccacttctccaacctac
tccccaactactcccaagtacagccccacttcccctacttattctccaacctctcctacc
tacacccccaccagccccaaatattcccccacctctccgacgtactctccaacgtctcca
aaatactcacccacatcccctacctactctccaactagtccgaagggctccacctacagc
cccacttctcccggctacagccccacctctccaacctacagcccagccatcagccctgat
gacagcgatgaagaaaataattaa
DBGET
integrated database retrieval system
