Sinocyclocheilus grahami (golden-line barbel): 107588437
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Entry
107588437 CDS
T04918
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107588437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgh03400
]
107588437
DNA repair and recombination proteins [BR:
sgh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107588437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
107588437
NCBI-ProteinID:
XP_016132009
LinkDB
All DBs
Position
Unknown
AA seq
1368 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKAKSDPSPAEADAVSRSNTSPEEEARVNSKKTPPKPVKSQT
VAGHAKLFGEKAVNAKESREPSSIFSAGTLVWAKLEGHPWWPCMIVPQPLTGQQMRGRGR
EQRLHVHFFDEPPTRGWVNTKYIREYHGSNSTDAKSGGVFFSGKPVIRKAMELADVAMKD
RPEQRLKMSMCMDPSGDEEEDDEDMEVDKSTLSDAEMSEEEVKEKAKASRRSSRAAAEKG
QKPKRRRIVVASDSDDSGEEFKPDQAGGSSDEDDEEGVSSGAEEEEREPETEPDSPVKQV
KRKRPSEKPAKSKSKPDPPKRAPAVVSPVTSGTKSRLSAFSAPDNFESQSGSANGMDGEA
TVWDHEKLEWLQDCKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFD
TVLFYKVGKFYELYHMDAVIGVNELSLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVAR
VEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSI
KEKSEEDSAGHRHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVLYEKGNP
SVEMLKIFKAILSSTLQEGLNAGSQYWDAQKTLKVLAEEDYFNECKADDEKASVLPSTLK
AMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDKELFSMGNFEEYVPVDVEMEQAG
GASGFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDMCCTPFGKRLLKQWLCA
PLCNPSSIGDRLDAMEDLMGAPSQAAEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDS
RAILYEEVVYSKRKIADFLAALEGFKVMREIASIMEPIAEGFKSKLLRQVMLLKTENKDG
LFPDLSPELKRWDTAFDHQKARTSGVITPKAGFDPEFDQALNGIKDCERGLQEYLDRQKK
RLGCKNMSYWGTGRNRYQLEVPDSVSERSLPEEYEVRSTKKGWKRYWTKEIERLFSELQS
WEDKRDAALKDCMRRLFYNFDKNCKDWQTAVECMAVLDVLLSMSRYSQSGDGPMARPEIV
LPGDGSQSRPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPDSEDDDDDNGKALAPCVLV
TGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFV
ELSETASILLHATKHSLVLLDELGRGTATYDGTAIASAVVQELSEKICCRTLFSTHYHSL
VEDHVQDPAVRLGHMACLVDHECEDPSQETITFLYKFIGGACPKSYGFNAARLASIPEEV
IQSGHKKAREFERSTVSLRIFKKLCSFAENPAAEREQFTTLVQMISSL
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagttctctttttaatttcttcacaaagtcgccgcctctggcggtgaag
gccaaatctgacccgtctccagcggaggcagacgcagtgagcagatccaacacatcaccc
gaagaagaagccagagtcaacagcaagaaaacgccaccaaaacccgtcaagtctcaaact
gtagctggacatgcgaagctattcggagagaaagcagtcaatgcaaaagagagcagagaa
ccatcatccatatttagcgctggcactctggtttgggccaagttggaaggccatccctgg
tggccctgtatgattgttcctcagcctctcaccggacagcagatgaggggccgtggccga
gagcaaagactccacgttcacttctttgatgaacctccaacccgaggttgggttaacaca
aaatacataagagagtatcatggctctaatagcacagatgccaaatcaggtggagtgttc
ttcagcggtaagcctgtgatccgtaaagcgatggagctggcagatgttgcgatgaaggac
cgtcctgagcagagactgaagatgtccatgtgcatggatccttcaggtgacgaagaggag
gatgatgaggatatggaggttgataaatcaaccttatcagatgcagaaatgtctgaggaa
gaggttaaagaaaaggcgaaggccagtcgacgttcatctcgtgctgcagctgaaaaaggt
caaaagccgaagcgtcgccgaatcgtggtggcgtctgacagcgatgactctggtgaagag
ttcaaacctgatcaggcaggaggaagcagtgatgaggatgacgaggagggagtgagtagc
ggggctgaggaagaagaacgcgagccggagacggaaccagacagccctgtgaaacaggtg
aagcgcaaacgtccttcagaaaagcctgctaagtcaaagagcaaaccagaccccccaaaa
cgagcacctgcagtggtttcaccagtgacatcgggcaccaaatctcgactttctgctttc
tccgcaccggacaactttgaaagtcagagcggcagcgcaaacgggatggatggagaagca
actgtgtgggaccacgagaagctcgagtggctgcaagactgcaagagaaaggatgcacag
cgcaaacgtcagtctgacgaaaactacgaccctacgactctatacgtacccgaagatttc
cttaaccggacgacgcctggaatgcgccgttggtggcagctgaaatctgagatgtttgat
accgttctgttctacaaagttggtaagttctacgagctctaccacatggacgctgtgatt
ggcgtcaatgaactcagtcttaccttcatgaagggtacttgggcccattctggcttccca
gaaattggctttggacgcttctcagacgtgctcgtgcaaaagggctacaaagtggctcgc
gtggaacagaccgagacccctgagatgatggaagcacgatgcaagacgttggcacgtccc
actaaattcgaccgcgttgtcaagcgagaggtttgccgaatcatcacgcgagggactcag
acgtacagcgtgctcgacggcgccccttctgaaactcaaagcaagtatctgttgagcatt
aaagagaagagcgaggaggacagcgcgggacacagacacatctacggggtgtgtttcatt
gacacctcagtgggacgcttccatatcggtcaattccaggatgaccgtcattgttcccgt
ttgcgtactctggtggcacattattctccagcccaggtgctttacgagaagggcaacccg
tcagttgagatgctaaaaatctttaaggccatcttgtcttcaactctacaagaaggcctc
aatgctggttcgcagtattgggatgcgcagaagaccctcaaggtccttgccgaggaagac
tacttcaacgaatgcaaagctgatgatgaaaaggcatcagtgttgccttcgactctaaaa
gcaatgacgtccgaatgcgatgctttaagtctcactccaaaaacgggttatgaacttgct
ctttctgcacttggcggatgcatgttctacttgaagaaatgtcttgtggataaggagctt
ttttcaatgggaaacttcgaggagtatgttcctgtcgatgtggagatggagcaggctgga
ggagcatcgggtttctttgcccagactcgtcaacgaatggttttggatggagtgaccctt
gctaaccttgagatccttcagaacagctcaactggaggcccagagggaaccctacttgag
cgactggacatgtgttgcactccctttggcaagcgcttgctaaagcaatggctctgtgcc
cctctttgcaatccatcctccattggagatcgcttagatgccatggaggacctgatgggt
gcgccgtcccaagcggccgaagtcacagacctgctaaagaagcttccggatcttgaaaga
ctgcttagcaagatccacagcatgggtactcctttgaaaggacaggaccatccggactcc
agagccattctgtacgaagaagtcgtctacagcaaacgcaagatcgccgactttcttgcc
gcacttgagggctttaaagttatgagagaaatcgcgtcgatcatggagcccattgcggaa
ggcttcaaatctaaactgctgcgtcaagtgatgctcctcaagactgaaaacaaagatggg
cttttccccgacctttcaccagagctcaaacgctgggatacagcttttgaccatcagaaa
gctcgcacctcaggcgtcatcacgccaaaggccggcttcgatccagagttcgaccaagct
ttaaatgggataaaagactgtgagagaggcctgcaggaatacctggaccgacagaagaag
cgactgggctgtaagaatatgtcttactggggaacgggaaggaaccgctaccagctcgaa
gttcctgacagtgtttccgagagaagcttgccagaggagtacgaggtgaggtccactaag
aaaggctggaaacggtactggactaaggagattgaacggctgttttcagagctacagagc
tgggaagacaaacgagacgcagcgcttaaggactgcatgagaagactcttctacaatttc
gacaagaattgcaaagactggcagacagcggttgaatgcatggcagtgcttgacgtgctg
ttgagcatgtcccggtacagtcagagcggcgacgggcccatggcgagaccagagatagtt
ctcccgggtgacgggtctcagtcacgccccttcctggatctcagagggtcccgtcaccct
tgcgtcaccaagaccttcttcggtgatgacttcatccccaatgacatcttcatcggctgc
cctgatagtgaagatgatgatgatgataatggtaaagcacttgccccatgtgtattggtc
accgggccaaacatgggaggcaagtccaccctaatgagacagtgtggtctggtggtgatt
ttggcccagctgggctgctatgtacctgctgagagtctgcgcctcactcctgtggaccga
gtcttcactcgtcttggcgcctctgatcgtataatgtcaggtgaaagtacgttctttgtg
gagctgagcgagacggccagcatcctgctgcacgccaccaagcactccctcgtcctgctg
gatgaactgggcagaggtacagccacgtatgacggcacggccatcgccagcgctgtggtg
caggagctgtcagagaagatctgctgccggaccctgttctccactcattaccactcactg
gtggaggaccacgtccaggaccctgccgtcagactcggacacatggcctgtttggtagat
cacgagtgcgaggaccccagtcaggagaccatcaccttcctgtacaagttcatcggtggc
gcgtgtcccaagagttacggcttcaacgcggctcgcctggcgagcatcccggaggaagtc
atccagtccggccataagaaggcccgtgagtttgagaggagcactgtgtctctccggata
ttcaagaagttgtgctcattcgctgaaaaccccgccgctgagcgcgagcagttcacgaca
ctggttcagatgatcagcagcctgtga
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