Sphingopyxis granuli: SGRAN_1415
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Entry
SGRAN_1415 CDS
T04372
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sgi
Sphingopyxis granuli
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sgi03009
]
SGRAN_1415 (rimO)
Enzymes [BR:
sgi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SGRAN_1415 (rimO)
Ribosome biogenesis [BR:
sgi03009
]
Prokaryotic type
ribosomal protein modification factors
SGRAN_1415 (rimO)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
AMG73804
UniProt:
A0AA86GKC7
LinkDB
All DBs
Position
complement(1535370..1536740)
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AA seq
456 aa
AA seq
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MPVKTLPAQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGSEADLIRARFPKVLAVTGAHQYEQVVDAVHDAVP
PTQGPFVDLVPEGGLKLTPRHYSYLKISEGCNHSCSFCIIPDLRGRLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDIRHDPREWKGREVRAHMTDLARELGQLRTNEGRAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPKVLKAMKRPANEAKVLERLAAWRA
IAPDIAVRSSFVVGFPGETEEDFRYLLDWLDEAQLDRVGAFRFEPVAGAQANALPDPVPE
AVKEERYQRIMEKTAAISAAKLAAKVGRTLPVIIDEVGEADEDGSIGATGRSQADAPEID
GHVYLRDVAAGLKAGDIVDVLVEDADEHDLFGVVTA
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcaagaccctccccgcccagccgaaagtcggcatggtttcgctcggctgcccg
aaggcgctggtcgacagcgaacgcatcctgacgaaattgcgtgccgatggctatggcctg
tcgcccgattacgccggggccgacgtggtgctcgtcaatacctgcggcttcctcgacagc
gcgaaggaggaaagcctcgaggcgatcggcgaggcgatggcggagaacggccgcgtcatc
gtcaccggctgcatgggcagcgaggccgatctgatccgcgcccgcttcccgaaggtgctc
gcggtcaccggggcccaccagtatgagcaggtggtcgatgcggtccacgacgccgtgccg
ccgacgcagggcccgttcgtcgacctggtgccggagggcgggctcaagctgaccccgcgc
cactacagctatctgaagatcagcgagggctgcaaccacagctgttccttctgcatcatc
cccgacctgcgcggtcggctggtcagccgccgcatcgacgcggtgctgcgcgaggcggag
aagctcgtcgcggcggggacgaaggaactgctggtgatcagccaggacacctcggcctat
ggcgtcgacatccgccatgatccgcgcgagtggaaggggcgcgaggtgcgcgcgcacatg
accgacctcgcgcgcgaactcggccagcttcggacgaacgaaggtcgtgcgccgtgggtg
aggctgcactatgtctatccctatccgcacgtcgatgcggtgatcccgctgatggcggag
gggctgctcaccccctatctcgacattcccttccagcatgcgagcccgaaggtgctgaag
gcgatgaagcgccccgcgaacgaagcgaaggtgctcgaacggctggccgcgtggcgcgcg
atcgcgcccgacatcgcggtgcggtcgagcttcgtcgtcggcttccccggcgagaccgag
gaggatttccgctatctgctcgactggctcgacgaggcgcagctcgatcgcgtcggtgcc
ttccgtttcgagcccgtcgcgggcgcgcaggcgaacgccctgcccgatccggtgccggag
gcggtcaaggaagagcgctatcagcggatcatggaaaagaccgccgcgatcagcgccgcg
aagctcgcggcgaaggtcggccgcaccctccccgtcatcatcgatgaggtgggcgaggcc
gacgaggatggcagcatcggcgccaccggccgcagccaggccgacgcgccggagatcgac
ggccatgtctacctccgcgacgtcgccgcggggctgaaggcgggcgacatcgtcgacgtg
ctggtcgaggacgccgacgagcatgacctgttcggggtcgtgaccgcctga
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