Sphingopyxis granuli: SGRAN_3042
Help
Entry
SGRAN_3042 CDS
T04372
Symbol
lysS
Name
(GenBank) Lysine--tRNA ligase
KO
K04566
lysyl-tRNA synthetase, class I [EC:
6.1.1.6
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
SGRAN_3042 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
sgi01007
]
SGRAN_3042 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgi03016
]
SGRAN_3042 (lysS)
Enzymes [BR:
sgi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
SGRAN_3042 (lysS)
Amino acid related enzymes [BR:
sgi01007
]
Aminoacyl-tRNA synthetase
Class I (A)
SGRAN_3042 (lysS)
Transfer RNA biogenesis [BR:
sgi03016
]
Prokaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
SGRAN_3042 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1f
tRNA-synt_1b
tRNA-synt_1g
Anticodon_2
Motif
Other DBs
NCBI-ProteinID:
AMG75389
UniProt:
A0AA86GLV8
LinkDB
All DBs
Position
complement(3345594..3347210)
Genome browser
AA seq
538 aa
AA seq
DB search
MTDFHLHPSLREPALTSKAWPFEEARKLVKRYPDGKPGSEPVVFETGYGPSGLPHIGTFN
EVLRTTMVRRAYQTLTANESGVPAPTRLVAFSDDMDGLRKVPDNVPQQEMLREHLGKPLT
AIPDPFGKYESFAHYNNAMLRDFLDRFGFDYEFVSSTERYRSGAFDDALKNVLRHYDAIM
AIMLPTLRAERAATYSPVLPISPTSGVVLQVPVTVVDADSGLVSFEDGGTVITHSILSGG
AKLQWKVDWAMRWVALGVDYEMYGKDLTDSGVQSGKIARALGGRKPEGLIYEMFLDEKGE
KISKSKGNGLSIEQWLTYGSEESLAFYAYREPKAAKQLHIGVIPKAIDEYLQMRGNYPAQ
EPDKKLGNPVHHVHAARGEAVPATELPVSFGLLLNLVGVMGADASKEQIWRYLGQYVAGA
DAATWPELDRLIDNAMAYNRDYVAPTLQRRKPRGGEAAALAELDARLAALPADTAADDIQ
NIVYEIGKDETYGFENLREWFKALYETLLGSSAGPRMGSFIALFGIANTRRLIAEALA
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactttcatctccatccgtcgctgcgcgaacccgcgctaacctcaaaggcctgg
ccgttcgaggaagcgcgcaagctggtcaaacgctatccggacggcaagccggggagcgag
cccgtcgtcttcgaaactggctatggcccgtcggggctgccgcatatcgggaccttcaac
gaggtgctgcgcacgacgatggtccgccgcgcctatcagacgctgaccgccaatgaatcc
ggagtgcctgcgccgacccggctggtggcgttcagcgacgacatggacggcctgcgcaag
gtgcccgacaatgtcccgcagcaggaaatgctgcgcgaacatctgggcaagccgctcacc
gccattcccgacccgttcggcaaatatgaaagtttcgcgcattataacaatgcgatgctg
cgcgactttctcgatcgtttcggcttcgattacgaattcgtcagctcgaccgaacgctat
cggtccggggcgtttgacgacgcgctgaagaatgtcctgcgccactatgacgcgatcatg
gcgatcatgctgccgacgctgcgcgccgagcgtgcggcgacctattcgccggtgctgccg
atcagcccgacctcgggcgtcgtgctccaggttccggtgacggtggtcgacgccgactcg
gggctggtgtcgttcgaggacggggggactgtaatcacccacagcatcctgtcgggcggt
gccaagctgcaatggaaggtcgactgggcgatgcgctgggtcgcgctcggcgtcgattac
gagatgtacggcaaggacctgaccgacagcggcgtccagtcgggcaagatcgcgcgggcg
ctcggcggccgcaagcccgaggggctgatctacgagatgttcctcgacgaaaagggcgag
aagatttcgaagtcgaagggcaacggcctgtcgatcgagcaatggctgacctatggcagc
gaggaaagcctcgctttctatgcctatcgcgaacccaaggcggcgaaacagctccacatc
ggcgtgatccccaaggcgatcgacgaatatctccagatgcgcggcaattacccggcgcag
gaaccggacaagaagctcggcaacccggtgcatcacgtccacgccgcgcgcggcgaggct
gtgcccgcgaccgaactgccggtaagcttcggcctgctcctcaacctcgtcggggtgatg
ggcgccgatgcgtcgaaggagcagatctggcgctacctcggccaatatgtcgcgggggcg
gacgcggcgacctggcccgagctcgaccggctgatcgacaatgcgatggcctacaaccgc
gactatgtcgcgccgacgctccagcgccgcaagccgcgcggcggcgaggcggcggcgctg
gccgaactcgacgcgcggctcgccgcgctgcccgccgataccgccgcggacgacatccag
aacatcgtctacgagattggcaaggacgagacctatggctttgaaaacctgcgcgaatgg
ttcaaggcgctctacgagacgctgcttgggtcgagcgccgggccgcgcatgggcagcttc
atcgcgctgttcggcatcgccaacacccggcggctgatcgcggaggctttggcgtaa
DBGET
integrated database retrieval system
