KEGG   Sporisorium graminicola: EX895_000242
Entry
EX895_000242      CDS       T09331                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sgra  Sporisorium graminicola
Pathway
sgra03020  RNA polymerase
sgra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sgra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EX895_000242
  09124 Replication and repair
   03420 Nucleotide excision repair
    EX895_000242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sgra03021]
    EX895_000242
   03400 DNA repair and recombination proteins [BR:sgra03400]
    EX895_000242
Transcription machinery [BR:sgra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     EX895_000242
DNA repair and recombination proteins [BR:sgra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      EX895_000242
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 40723137
NCBI-ProteinID: XP_029742229
LinkDB
Position
SGRAM_1:join(586815..586899,586984..587104,587187..587264,587353..587593)
AA seq 174 aa
MQAHDVGRDRRHRGLIEDEDAAIGKLGTEFDDVGCLLISEVELVFSQPDSLGSMANEAGA
GGRDEVATAVFSKTKDYVSEFSRYKDPNTIREIRELLLKHAKLDERLVDEHGNELPEEET
PEGLQLTQFEMAQLANLCITEVDEAKALIPTLATRDDALLDSLLQELDNIRRFS
NT seq 525 nt   +upstreamnt  +downstreamnt
atgcaggcacacgatgtgggccgtgaccgccgtcaccgaggattgatcgaagacgaagat
gcagccattggcaaactcggtacagaattcgacgacgttggatgtctactcatctccgaa
gtcgagctcgtcttttcacaacccgactcgctcgggtcgatggcgaacgaggctggagcc
ggtggtagagacgaagtggctactgccgtcttctccaagaccaaagactatgtttccgaa
ttctcgcgctacaaagatccaaacacaatccgagagatccgagaactgctcctcaaacac
gccaaacttgacgaaaggttggtcgatgaacacggcaacgagctgcccgaagaagagact
ccagaaggtctgcaattgacgcaattcgaaatggctcagttggcaaacttgtgcatcacg
gaggtggacgaggcgaaagcgctgatcccgacattggcgacgagggacgatgccttgttg
gacagtttgttgcaggagctggataacattcgtcgcttctcgtag

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