Strigops habroptila (Kakapo): 115603026
Help
Entry
115603026 CDS
T08851
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03020
RNA polymerase
shab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115603026 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
115603026 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115603026 (POLR2A)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115603026 (POLR2A)
Enzymes [BR:
shab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115603026 (POLR2A)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115603026 (POLR2A)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115603026 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
115603026
NCBI-ProteinID:
XP_030330402
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLAKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPDGDEDLAREKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQANRPVMGIVQDT
LTAVRKFTKRDVFLQRGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKEILSNAHIQNELEREFEKMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPIKVVEGVRELSRRLV
IVNGEDPLSRQAQHNATLLFNIHLRSTLCARRMADEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSTLPGMGMGGPTGM
FFGSAPSPMGGLSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccgccctccggagacagcgcctgcccgctgcgcaccatcaagcgggtg
cagttcgggatcctcagccccgatgagatgaaacggatgtcggtgactgaggggggcatc
aagtaccccgagaccacagaggggggacgccccaaacttggggggcttatggacccccga
cagggtgtcattgagaggacggggcgctgccagacctgtgccgggaacatgacggagtgc
ccggggcactttgggcacatcgagctggccaaacccgtgttccacgtgggcttcctggcc
aagaccatgaagatcctgcgctgcgtctgcttcttctgctccaagctgctggtggactcg
aacaaccccaagatcaaggacatcctgggcaagtccaaggggcagcccaagaagcggctc
acgcacgtctacgacctgtgcaagggcaagaacatctgcgagggcggcgaggagatggac
cacaagttcggcgtcgagcagcccgacggcgacgaggacctcgccagggagaagggccac
ggggggtgcgggcggtaccagccgcgcatccggcgctcggggctggagctttacgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggaccccaag
ttcgcccgccccgagtggatggtgtgcaccgtgctgcccgtgccccccctggccgtgcgc
cccgccgtcgtcatgcagggctccgcgcgcaaccaggatgacctgacccacaagttggcc
gacatcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggggcggccgcgcac
gtcatcgccgaggacgtcaaactgctccagttccacgtggccaccatggtggacaacgag
ctgcccggcctgccccgggccatgcagaagtcggggcgccccctgaagtccctgaagcag
cggctgaaggggaaggagggccgcgtgcggggcaacctcatgggcaagcgcgtggacttc
agcgcccgcacggtcatcacccccgaccccaacctggccatcgaccaagtgggggtgccc
cgctccatcgccgccaacatgaccttcgccgagatcgtcacccccttcaacatcgacagg
ctgcaggagctggtgcgccgcgggaacagccagtacccgggggccaagtacatcatccgc
gacaacggcgaccgcatcgacctgcgcttccaccccaagcccagcgacctgcacctgcag
accggatacaaggtggagcgtcacatgtgcgacggggacatcgtgatcttcaaccggcag
cccacgctgcacaagatgtccatgatgggccaccgcgtgcgcatcctgccctggtccacc
ttccgcctcaacctcagcgtgaccacgccgtacaacgcggactttgacggggacgagatg
aacctgcacctgccgcagtcgctggagacgcgcgcggagatccaggagctggccatggtg
ccgcgcatgatcgtcaccccccaggccaaccggcccgtcatgggcatcgtgcaggacacg
ctcaccgccgtgcgcaagttcaccaagagggacgtcttcctgcagcgcggcgaggtgatg
aacctgctcatgttcctgtccacgtgggacgggaaggtccctcaacccgccatcctgaag
ccgcggccgctctggaccgggaagcagatcttctccctcatcatccccggccacatcaac
tgcatccgcacccacagcacccaccccgacgacgaggacagcgggccctacaagcacatc
tcgcccggggacaccaaggtgatcgtggagaacggggagctcatcatgggcatcctgtgc
aagaagtccctgggcacgtcggccgggtccctggtgcacatctcctacctggagatgggc
cacgacaccacgcgcctcttctacagcaacatccagaccgtcatcaacaactggctgctc
atcgagggtcacaccatcggcatcggggactccatcgccgacgccaagacctaccaggac
atccagaacaccatcaagaaggccaagcaggacgtcatcgaggtgatcgagaaggcccac
aacaacgagctggagcccacgccggggaacaccctgcgccagaccttcgagaaccaggtg
aaccgcatcctgaacgacgcgcgcgacaagacgggctcctcggcgcagaagtccctctcc
gagtacaacaacttcaagtccatggtggtgtccggggccaagggctccaagatcaacatc
tcccaggtcatcgccgtggtggggcagcagaacgtggagggcaagaggatcccgttcggc
ttcaagcaccgcaccctgccccacttcatcaaggacgactacgggcccgagagccgcggc
ttcgtggagaactcctacctggccggcctcacccccaccgagttcttcttccacgccatg
ggcgggcgcgagggcctcatcgacaccgccgtcaagacggcggagaccgggtacatccag
cgccggctcatcaagtccatggagtcggtgatggtgaagtacgacgcgacggtgcgcaac
tccatcaaccaggtggtgcagctgcgctacggcgaggacgggctggccggggagagcgtc
gagttccagaacctcgccacgctcaagccctccaacaaggccttcgagaagaagttcaag
tttgactacacgaacgagcgggcgctgcggcggacgctgcaggaggagctggtcaaggag
atcctgtccaacgcgcacatccagaacgagctcgagagggagttcgagaagatgcgggag
gacagggaggtcctcagggtcatcttccccaccggcgacagcaaggtggtgctcccctgc
aacctgctccgcatgatctggaacgcgcagaagatcttccacatcaactcgcggctgccc
tcggaccttcaccccatcaaggtggtggagggggtgcgggagctgagccggcggctggtg
atcgtgaacggggaggacccgctgagcaggcaggcgcagcacaacgccacgctgctcttc
aacatccacctgcgctccacgctctgcgcccgccgcatggccgacgagttccgcctcagc
ggagaggccttcgactggctcctgggcgagatcgagtccaagttcaaccaggccatcgcg
caccccggggagatggtgggtgctctggccgcgcagtcgctgggggaaccggccacccag
atgaccctgaacacgttccactacgccggggtctcggccaagaacgtgaccctgggggtg
ccgcgcctcaaggagctcatcaacatctccaagaagcccaagaccccgtcgctcaccgtg
ttcctgctgggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacaccaccctgcgcaaggtgacggccaacaccgccatctactacgaccccaaccct
cagagcacggtggtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgac
ttcgacgtgagccgcatctcgccctggctgctgcgcgtcgagctcgaccgcaagcacatg
acggacaggaagctcaccatggagcagatcgccgagaagatcaacgctggctttggtgac
gacctcaactgcatcttcaacgacgacaacgcggagaagctggttctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgac
gacgtcttcttgcgctgcatcgagtccaacatgctgacggacatgacgctgcagggcatc
gagcagatcagcaaggtgtacatgcacctcccgcagacggacaacaagaagaagatcatc
atcacggaggacggggagttcaaggcgctgcaggagtggatcctggagacggacggcgtg
agcctcatgcgggtgctgagcgagaaggatgtggaccccgtgcgcaccacgtccaacgac
atcgtggagatcttcaccgtgctgggcatcgaggcggtgcgcaaggcgctggagcgggag
ctctaccacgtcatctccttcgacggctcgtacgtgaactaccggcacctggcgctgctc
tgcgacaccatgacctcgcgcggccacctcatggccatcacccgccacggcgtcaaccgc
caggacaccgggcccctcatgaagtgctccttcgaggagacggtggacgtgctgatggag
gcggcggcgcacggcgagagcgaccccatgaagggggtgtcggagaacatcatgctgggg
cagctggcgcccgccggcaccggctgcttcgacctgctcctcgatgccgagaagtgcaaa
cacgggatggagattcccagcaccctgccgggaatgggcatgggcgggcctactggaatg
ttcttcgggtcggcccccagccccatggggggcctgtccccggccatgacaccctggaac
caaggtgctacccccgcctatggggcctggtcccccagtgtgggcagcgggatgaccccc
gggggcgccggcttctcccccagcgccgcctcggacgccagcggcttcagccccggctac
tccccggcctggtccccgacccccggctcccccggctcccccgggccctccagcccctac
atcccttcacccggcggtgccatgtcacccagctacagcccgacgtcacccgcctacgag
ccccgttcacccgggggctacaccccccagagccccagctacagccccacatcgcccagt
tacagccccacatcgcccagctacagcccgacgtcgcccaactacagcccgacgtcgccc
agctacagccccacatcgcccagttacagcccgacgtcgcccagctacagccccacatcg
cccagctacagcccgacgtcgcccagctacagccccacttctcccagctacagccccaca
tcgccaagctacagcccaacttcgcccagctacagcccgacctcgcccagctacagccca
acgtcacccagctacagccccacttctcccagctacagccccacatcaccaagctacagc
ccaacttcccccagctacagcccgacctcgcccagctacagccccacttctcccagctac
agccccaccagccccaactacagccccaccagccccaactacaccccgacctcacccagc
tacagccccacttctcccagctacagccccaccagcccaaactacaccccgacctccccc
aactacagccccacctcgcccagctacagccccacctcccccagttacagccccacctcc
cccagttacagcccctccagcccccgctacaccccgcagtcgcccacctacacccccagc
agccccagctacagccccagcagccccagctacagccccacctcccccaagtacaccccg
accagccccagctacagccccagctcccccgagtacaccccgaccagccccaagtacagc
cccaccagccccaagtacagccccaccagccccaagtacagccccacctcgcccacctac
agccccaccacccccaagtacagccccacgtcccccacctacagccccaccagccccgtc
tacaccccgaccagccccaagtacagccccaccagccccacctacagccccaccagcccc
aagtacagccccacttcacccacctacagccccaccagccccaaggggtccacctacagc
cccacctcccccggctacagccccacgtcacccacctacagcctcaccagcccggccatc
agccccgacgacagcgacgaggacaactga
DBGET
integrated database retrieval system
