Strigops habroptila (Kakapo): 115607112
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Entry
115607112 CDS
T08851
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115607112 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115607112 (CLP1)
Enzymes [BR:
shab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
115607112 (CLP1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115607112 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
ATP_bind_1
AAA_16
AAA_22
TniB
AAA_18
CbiA
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115607112
NCBI-ProteinID:
XP_030339799
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All DBs
Position
4:complement(129325..132080)
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AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVESSQTVQMELLSGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDKR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDSISGTSVAGFIVVTGVDPERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacggcggcgaggagaagaagcaagtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggagtcgtcgcagacggtgcagatggagctgctcagcggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgccggc
gccaaggtggccgtgttcacgtggcacggctgcaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtccaaggacacgccgatgctgctgtacctcaacacgcacacggcgctg
gagcagatgcggcgccaggcagagcgcgaggacgagcgcgggccccgcgtcatggtggtg
ggacccaccgacgtgggcaagtccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctctgtctccatcccc
ggcaccatgggtgcgctctacatcgagcggccggccgatgtggaagagggcttctccctc
caggccccactcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcccgcctggctgacgtgttcaaccagcgctgcgaggtgaaccgccgc
gcctcggtcagcggctgcgtcatcaacacctgcggctgggtgaagggctccggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtattggaccaggag
cggctctacaacgagctcaagagggacctgccccacttcgtgcgcacggtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggagtgccgggacaagcgc
atccgcgagtacttctacggcttccgcggctgcttctacccccacgccttcgacgtcaag
ttctccgatgtcaagatctacaaggtgggggctcctaccatccccgactcctgcctgccg
ctgggcatgtcgcaggaggacaaccagctgaagctggtgccggtgacaccggggcgggac
atggtgcaccacctgctgagcgtcagcaccgccgacagccccgacgacagcatctcgggc
accagcgtggccgggttcatcgtggtgacgggcgtggaccccgagcgccaggtcttcacc
gtgctctcgcccgcgccgcgcccgctgcccaagaacttcctgctcatcatggacatccgc
ttcatggacctcaagtag
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